Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002726 [exp] 134 / 9e-38 ND 37 / 0.008 Lus10012425 [exp] 132 / 8e-37 ND / Lus10001305 [exp] 126 / 2e-36 ND / Lus10034508 [exp] 116 / 2e-32 ND / Lus10010399 [exp] 115 / 3e-32 ND / Lus10008832 [exp] 114 / 2e-31 ND / Lus10003596 [exp] 110 / 2e-29 ND / Lus10010270 [exp] 105 / 3e-28 ND / Lus10014486 [exp] 110 / 5e-28 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003784 pacid=23157503 polypeptide=Lus10003784 locus=Lus10003784.g ID=Lus10003784.BGIv1.0 annot-version=v1.0 ATGACCATATACCGTAATGGTTTAATGGTCCTTCCAATCCCCCTTCGTCTTCATGTGACCCGGTTCCAGAAGAAATTTAAGAGAAGTGGTGGTGCTTCTT CTTCTGCTCCAGTTGATCCAATACTTAATCCAACATTCTTCAAGCACTTTCCTTTAGAGATGTTGAAGTTTGTATCCCAAGATGGAGTTCAATTCCCTCT GGCGCTTAAGGAGATGAGTAAAGCTTTCGAAACTCTCAATGCTGGCAGTACTAGTTCTGACAGTAGTGTTAGAACTGTTACTTCCATGACCCCTGCTAGT GTTAAGATTGGAGATGCGAGTGCCAGAGTGGGACAAGAGAAGAGTTTCAGAAAGAAGCGATTGAATAAGGAACTGCACATACCATATGAAAGTGAGGAAG AGGAAGAAGAGAAAGAGGAAGATCAGGATGACAAGAATGCTTCAAAAACATTCTTCACAGCTCAAGCTCCCGGCGGCGTGTTAATCATCGATGGCGACGA AACCCGCTATCCTCTACACACTCAGGGAACTCGACAGGAAGGGGAAACCCACTCCATCGATGGCAATTCTCTTGATTCGAATCCATACTCAGCCAGCTTC ACATCCAGGTCGTTCGTGAACGAGGTCCCGGCGAAACGAAGGTGTCAATTATTCCATCCGGCTCTAGTTCGAACGAGAATCCGTCTCGCTCGGCGTCGGG AGCTACGGCGTTTGCTCTTGAAGTCTGAATCAAGGCAGACACGACCGTTTGATGTCGTGAAACATCTCCGACTAGTGGCAGTGTGTTCCGAGGATGAACG ACGAATGTGCAATCCGTCCAAGAATTAA
AA sequence Show only first row Show all	>Lus10003784 pacid=23157503 polypeptide=Lus10003784 locus=Lus10003784.g ID=Lus10003784.BGIv1.0 annot-version=v1.0 MTIYRNGLMVLPIPLRLHVTRFQKKFKRSGGASSSAPVDPILNPTFFKHFPLEMLKFVSQDGVQFPLALKEMSKAFETLNAGSTSSDSSVRTVTSMTPAS VKIGDASARVGQEKSFRKKRLNKELHIPYESEEEEEEKEEDQDDKNASKTFFTAQAPGGVLIIDGDETRYPLHTQGTRQEGETHSIDGNSLDSNPYSASF TSRSFVNEVPAKRRCQLFHPALVRTRIRLARRRELRRLLLKSESRQTRPFDVVKHLRLVAVCSEDERRMCNPSKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003784 [exp]	0	1
AT1G30190			unknown protein		Lus10023301 [exp]	9.0	0.8932
AT3G06240			F-box family protein (.1)		Lus10018106 [exp]	9.2	0.8525
AT3G47570			Leucine-rich repeat protein ki...		Lus10030903 [exp]	18.4	0.8548
AT1G17010			2-oxoglutarate (2OG) and Fe(II...		Lus10025369 [exp]	29.7	0.8515
AT2G19330		PIRL6	plant intracellular ras group-...		Lus10003229 [exp]	30.9	0.8246
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10016177 [exp]	31.7	0.8071
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10031675 [exp]	39.4	0.8268
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10042494 [exp]	44.2	0.8280
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004443 [exp]	46.2	0.8174
AT2G04305			Magnesium transporter CorA-lik...		Lus10020472 [exp]	50.2	0.8146

Compare expression of checked genes

Lus10003784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.