Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10150 402 / 6e-139 ATPP2-A10 Carbohydrate-binding protein (.1) AT1G59510 360 / 7e-123 CF9 Carbohydrate-binding protein (.1) AT3G49790 276 / 5e-90 Carbohydrate-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012487 [exp] 695 / 0 AT1G10150 439 / 2e-153 Carbohydrate-binding protein (.1) Lus10007727 [exp] 516 / 0 AT1G10150 429 / 1e-149 Carbohydrate-binding protein (.1) Lus10018663 [exp] 379 / 6e-131 AT1G10150 342 / 2e-116 Carbohydrate-binding protein (.1) Lus10039651 [exp] 275 / 1e-89 AT1G10150 298 / 2e-98 Carbohydrate-binding protein (.1) Lus10011718 [exp] 265 / 2e-85 AT1G10150 288 / 2e-94 Carbohydrate-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G116400 [exp] 462 / 2e-162 AT1G10150 387 / 1e-132 Carbohydrate-binding protein (.1) Potri.014G014100 [exp] 440 / 1e-153 AT1G10150 401 / 3e-138 Carbohydrate-binding protein (.1) Potri.007G006600 [exp] 374 / 1e-127 AT1G10150 355 / 8e-120 Carbohydrate-binding protein (.1) Potri.014G006800 [exp] 343 / 1e-115 AT1G10150 350 / 5e-118 Carbohydrate-binding protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003785 pacid=23157502 polypeptide=Lus10003785 locus=Lus10003785.g ID=Lus10003785.BGIv1.0 annot-version=v1.0 ATGGATCTAGTAATGGTGAAGGAGCAAGGTTTGGAATTGTATAAGAGGAGGAAGAAATGGCTGCTTCTGTTGGGTGTGATTGGGGTATCTGGTTATGGTG CTTACAAGGTTTATAATCTGCCTTCCGTGACGAGGAAGCGGCGGAGGTTCATGAAGCTAGCCGGAGCTTTGGTTTCCGTCGCTGAGATGTTGTCTGATTC TGCGGAGACAATGGGCATCGTGTCTAGAGATTTGAAGGAGTTTCTGCAGTCAGATTCAGATGAACTCCCCAATAGTTTGAAGCAGATATCGAAACTCACC AAATCGGACGAGTTCTCCATGTCATTGTCTCGGGTTTCTCAGGCCATGACGGTTGGTATTCTGCGTGGGTATGAAGAATGCGTGTCGCGGAAGGAGAATC AATCGGCCGCAGGAGCTATGGATTCCAGTTTGAAGGATAAATTCGCTGAGAAACTATTCTCTGAAGCGGGGACTGGATTTGTATCCGTTGTGGTTGGAAG CTTCGCCAGAAATTTAGTTTTGGGGTTCTACTCTGCTGACAAAGATGGTGAGGAGGATAATGAAGTGAAGAAGAGTTCATCAACTGATGTATCTAGATGG ATTAGTGTTGTTTGTAATGGGCAGGGCAAGGAGCTTATAGCTGATTGCGTACAACAGTTTGTAAGCACTGCAGTGGCAGTTTTCCTTGATAAGACAATCC ACCTCAATACTTACGATCAATTCTTTGCCGGCCTTACCAATCCGAATCACCGAAACGATGTGAGAGACATGCTGGTGGAGGTCTGCAATGGGTCTGTAGA AACGCTGGTAAAAACATCTCACCATGTATTGACAATGTCAAGCTCGAATCTGAGTGAAGCAGATGAGCCGGTCAAGGGGGAGAAAAGAAGCTCGCAGAGT GGTGGGTGGATTAATCAGGTTTCATCGACATTGGCAGTGCCAAGTAACAGAAAGTTGGTGCTAGACGTGACAGGGAGGGTAACATTTGAAACGGTGAGAT CCATAGTGGCATTGCTGTTGTGGAAGATGTCGGATGGTTTGAAAACAAGTGTTAATGTAGTTCATGATGGAGCAGTGGAGAGGGGGCTTCAAGTTGTGAG ATATGTTGGTGCCAAGTCTTCAGTCATTGTTACCATTTGTCTGGCCTTGTATTTACATATAGTGGGCAGCACCAGGGTCATCATGACTGCTTAA
AA sequence Show only first row Show all	>Lus10003785 pacid=23157502 polypeptide=Lus10003785 locus=Lus10003785.g ID=Lus10003785.BGIv1.0 annot-version=v1.0 MDLVMVKEQGLELYKRRKKWLLLLGVIGVSGYGAYKVYNLPSVTRKRRRFMKLAGALVSVAEMLSDSAETMGIVSRDLKEFLQSDSDELPNSLKQISKLT KSDEFSMSLSRVSQAMTVGILRGYEECVSRKENQSAAGAMDSSLKDKFAEKLFSEAGTGFVSVVVGSFARNLVLGFYSADKDGEEDNEVKKSSSTDVSRW ISVVCNGQGKELIADCVQQFVSTAVAVFLDKTIHLNTYDQFFAGLTNPNHRNDVRDMLVEVCNGSVETLVKTSHHVLTMSSSNLSEADEPVKGEKRSSQS GGWINQVSSTLAVPSNRKLVLDVTGRVTFETVRSIVALLLWKMSDGLKTSVNVVHDGAVERGLQVVRYVGAKSSVIVTICLALYLHIVGSTRVIMTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10003785 [exp]	0	1
AT3G07870			F-box and associated interacti...		Lus10029527 [exp]	8.2	0.8258
AT4G35770		ATSEN1, DIN1, S...	SENESCENCE ASSOCIATED GENE 1, ...		Lus10028390 [exp]	11.1	0.8527
AT4G27790			Calcium-binding EF hand family...		Lus10022381 [exp]	15.7	0.8197
AT3G07350			Protein of unknown function (D...		Lus10002335 [exp]	18.0	0.8424
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10018084 [exp]	27.5	0.8407
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004028 [exp]	36.4	0.8009
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10042080 [exp]	41.4	0.7773
AT2G27310			F-box family protein (.1)		Lus10028024 [exp]	46.2	0.7844
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10022931 [exp]	50.6	0.8175
AT4G28240			Wound-responsive family protei...		Lus10031617 [exp]	51.2	0.7928

Compare expression of checked genes

Lus10003785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.