Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G59520 438 / 5e-149 CW7 CW7 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012485 [exp] 701 / 0 AT1G59520 452 / 7e-159 CW7 (.1.2.3) Lus10024741 [exp] 345 / 2e-111 ND / Lus10020956 [exp] 347 / 2e-110 ND / Lus10039939 [exp] 281 / 1e-89 ND / Lus10022518 [exp] 273 / 3e-86 ND / Lus10023811 [exp] 232 / 2e-68 ND / Lus10024489 [exp] 214 / 7e-65 ND / Lus10022108 [exp] 171 / 3e-49 ND / Lus10013515 [exp] 153 / 3e-42 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G013500 [exp] 499 / 8e-173 AT1G59520 505 / 7e-180 CW7 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09741 [flax] [poplar] DUF2045 Uncharacterized conserved protein (DUF2045)
Representative CDS sequence Show only first row Show all	>Lus10003786 pacid=23157504 polypeptide=Lus10003786 locus=Lus10003786.g ID=Lus10003786.BGIv1.0 annot-version=v1.0 ATGGATTCTCTTCACAAAAGGGGACGGGGCGTGCTTCAGTCCACCTCTTTTCAGGTGCAGGGCATGCCGAATGCGGTTAAAACACCGTGCTTCAGCTTCG CCGATCAGGCAGATCAGCAGGTTTGGACAGAGATTTCCCAGAAGGCTATTACCGCTTCTGGATGGGTTGACTGGGCTGAGATGTCAACCACTGGCATAGG GGAGCGGTTCGCCTCCACCATTGATGTTGCTGGCCTCTGGCCTTTGTTCAATGTGAAGGACGACGCACAGGAGTGGGCAACCAAAGAGGTGATCACCTCC ATCCGGGTCAAGGTGACGACTGATCCGCGAGAGGCTGACGCGGTCCAGCTCCAGTGCGGCGGGGTCCTCCACTCCTGGTCATTCAACGAGTTCGGGGTGT ACCTCGGCTTCTACTCTATGGAGGAACTCACATCCGGTCCGCCGTTACCCATTTTTGCTGGAGCTACTTGCAAGGTTCATGAGGAGTTTTGGAGTGAGAT TACTCCTGCTGAGCCCATGAAGCGTCTTAAGGGCGGCTGCTGGAGCTACTACAAGTCCAGCACTTCCAAGGACGCAGCAATCGAGGTGCCTCTTCTCCGC CTCCTCCACCATTTTATTCCTCCTGTACAGCGTCCACACCAAGGAGCGAGTCCATCTGGCCCCCTTGGTTGCCAAGCTACTGGCAGCACAGCGGGCTCGT TCCGCCGAGACAACCAGCAAGCTGTACTGGAGCTCACTCCTGGAAAAGAAGAAGAAAAATTGTCTTTCGGTGCTTTTAAAGAAATGCTTGGGGATGGCAG AGATACTCCTTCCAGGTATGAGTTGTTGACTACGGTGAAGAAGCACTCGGCATTCCTAGGGCGTGAGGAGGAGCAAGATCCTTCTGACGCTCACATGGAT ATTCGATTTTGGCGTGATATGTTTGATATGTACTTCTTCCGTGGTAAAGAGACGAGGGGAAGCCAAGAAGATGATCTCATATTCTTTGTTAAGAAAAAGA TCACACAGAAACATTGCGCCAATGATGATGACGAGGACCCTCCATACTTTGTCCGCAGGTGGGCACCTAAGTTGGATGATTTAATAACCGAGGAATCAGC AGAGGTGGACTGGGGGCGCTCCTTTTACCTGAATATGATAGCACACACGTCATACTCAGTAACTGTGGCTATTTGCAGTTATAATGTACTTCAGAATCAT AAAGCTGGCCAAAACATGCCATTGTCTCCCATATACAAGGTTGTAAAGACTGTCTATGCATCTCCAAGTCGTGTAAATTTTCAACTGGACTCTAAAAAGG AAGTGGAGACATTGCCAGCTTATCCAGAAATCTGTTTTGCAGTTGACGATTTTGACTCCACTATTGATGCTGTGGTTCTGACTGAAAGAGACCATTGCTA TTGTGTGCTTCTTAATGCACATGATGGGGCAGCATTTCCTACTGAAGATGAGTCACATGATAGGAGTTCTAGTAGCTCTTGTCAGAGAACTGATAAAAAT TCTGCAAATATAAAGGCATCAAAGCTCACTCTTTTCTCTGGCTTCGTAAGCTATCAAATGGTTCGACAAGCTTATGAGGCGGGTAAGTCGGGATTTGGAA GCCTTCTTTCTCTTGGTCAATCTCCCCGCAAACCAGACAAGCTTTTCATGAAAGGCCCTGGAGGTCGTGGGGAAGTGGAGGTTGCTGTTTCTGGTGTTGC AGATCAAAGCCAGGTAGGGGATAGTGGTCCATTCTCACCACTTGCGTCGAAAAAAGGGTTTGGGATTGGGTCAATTGTTAAAAAGGCAGCATCAGTTGCA TCTGAAGCCGCAAAAAATGCATATGCTGCAGCTTCAACATCCTCAGGCGACGAAATGTTGCCCCTGAAATGCTGTTTGATGTCTATTTCATTACCTTGGG AAGACATTGCTTGTGATCTTTTATTCAAGGAACTCAACTATTCAAGTTTGCCGAAATGGCTGCCACCGGAAGATGGTCGCAAAGTCGCCAACCAGTCACC GGAGACGGTAATAGTTTGCCAGTCAGTCGCTAGACTGGGTTGGGATGAGGTGACAATAAAACAAAAAGAATCGTACAATACTTGA
AA sequence Show only first row Show all	>Lus10003786 pacid=23157504 polypeptide=Lus10003786 locus=Lus10003786.g ID=Lus10003786.BGIv1.0 annot-version=v1.0 MDSLHKRGRGVLQSTSFQVQGMPNAVKTPCFSFADQADQQVWTEISQKAITASGWVDWAEMSTTGIGERFASTIDVAGLWPLFNVKDDAQEWATKEVITS IRVKVTTDPREADAVQLQCGGVLHSWSFNEFGVYLGFYSMEELTSGPPLPIFAGATCKVHEEFWSEITPAEPMKRLKGGCWSYYKSSTSKDAAIEVPLLR LLHHFIPPVQRPHQGASPSGPLGCQATGSTAGSFRRDNQQAVLELTPGKEEEKLSFGAFKEMLGDGRDTPSRYELLTTVKKHSAFLGREEEQDPSDAHMD IRFWRDMFDMYFFRGKETRGSQEDDLIFFVKKKITQKHCANDDDEDPPYFVRRWAPKLDDLITEESAEVDWGRSFYLNMIAHTSYSVTVAICSYNVLQNH KAGQNMPLSPIYKVVKTVYASPSRVNFQLDSKKEVETLPAYPEICFAVDDFDSTIDAVVLTERDHCYCVLLNAHDGAAFPTEDESHDRSSSSSCQRTDKN SANIKASKLTLFSGFVSYQMVRQAYEAGKSGFGSLLSLGQSPRKPDKLFMKGPGGRGEVEVAVSGVADQSQVGDSGPFSPLASKKGFGIGSIVKKAASVA SEAAKNAYAAASTSSGDEMLPLKCCLMSISLPWEDIACDLLFKELNYSSLPKWLPPEDGRKVANQSPETVIVCQSVARLGWDEVTIKQKESYNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G59520		CW7	CW7 (.1.2.3)		Lus10003786 [exp]	0	1
AT1G54390		ING2	INHIBITOR OF GROWTH 2, PHD fin...		Lus10033830 [exp]	4.5	0.8609
AT5G05670			signal recognition particle bi...		Lus10029130 [exp]	4.7	0.8747
AT3G20190			Leucine-rich repeat protein ki...		Lus10033339 [exp]	6.3	0.8479
AT3G18940			clast3-related (.1)		Lus10023834 [exp]	7.7	0.8759
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10043201 [exp]	10.8	0.8640
AT1G20670			DNA-binding bromodomain-contai...		Lus10022999 [exp]	13.0	0.8698
AT5G40580		PBB2	20S proteasome beta subunit PB...		Lus10014581 [exp]	19.3	0.8401
AT4G13720			Inosine triphosphate pyrophosp...		Lus10011757 [exp]	20.7	0.8457
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10014198 [exp]	23.9	0.8428
					Lus10012802 [exp]	24.7	0.8131

Compare expression of checked genes

Lus10003786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.