Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19450 114 / 4e-31 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G34230 110 / 7e-30 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT4G39330 74 / 2e-16 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT2G21730 73 / 6e-16 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT2G21890 72 / 1e-15 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT4G37970 70 / 6e-15 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT1G72680 66 / 2e-13 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT4G37980 57 / 2e-10 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT4G37990 56 / 6e-10 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT1G30760 47 / 1e-06 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014104 [exp] 138 / 2e-40 AT3G19450 530 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10019811 [exp] 137 / 5e-40 AT3G19450 531 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10002812 [exp] 126 / 8e-36 AT3G19450 523 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10027864 [exp] 126 / 8e-36 AT3G19450 519 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10038445 [exp] 85 / 6e-20 AT1G30760 415 / 6e-141 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 77 / 3e-17 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10010149 [exp] 71 / 5e-15 AT1G72680 550 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Lus10017354 [exp] 71 / 6e-15 AT1G72680 539 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Lus10005611 [exp] 69 / 2e-14 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G095800 [exp] 120 / 1e-33 AT3G19450 476 / 3e-169 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Potri.001G307200 [exp] 78 / 6e-18 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.009G063300 [exp] 74 / 8e-17 AT4G37990 283 / 2e-95 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.001G268600 [exp] 73 / 4e-16 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.009G063400 [exp] 72 / 1e-15 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.006G199100 [exp] 71 / 5e-15 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.011G148100 [exp] 69 / 2e-14 AT1G72680 571 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.016G065300 [exp] 68 / 4e-14 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.016G078300 [exp] 67 / 5e-14 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.009G062901 [exp] 65 / 6e-14 AT4G39330 214 / 1e-69 cinnamyl alcohol dehydrogenase 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10003787 pacid=23162676 polypeptide=Lus10003787 locus=Lus10003787.g ID=Lus10003787.BGIv1.0 annot-version=v1.0 ATGGATCAAATCGGTCCACTACATCGTCGGATACCCATCAAACACCCGATCAGAAGCCCTCATAGAAGGGAAATCTCTGTTCAAAAATTACTTGAAAGCC AAATCCAATTTCGTCAAAGACCCAATTCCGGAATCGGGTCTCGAAGGGATATGGACATGGGAGTTAAGATCGCCAAAGCAATGGGACACCATGTGACTAT AAGTAGCTCTTCCGATAAAAAGAAGGTGGAAGCCTTGGATCATCTCGGAGCTAATGAGTATTTGGTCAGCTCGAATTTGGCAACAATGGAACAAGCTACT GATTCGTTCCATTACATAATCGATACCGTCCGTGTGAACCACCTTCTCGAGCCTTACCTATCGCTGCTAAAGTTTGATCGGAAATTGATATTGATGGGAA ATTGA
AA sequence Show only first row Show all	>Lus10003787 pacid=23162676 polypeptide=Lus10003787 locus=Lus10003787.g ID=Lus10003787.BGIv1.0 annot-version=v1.0 MDQIGPLHRRIPIKHPIRSPHRREISVQKLLESQIQFRQRPNSGIGSRRDMDMGVKIAKAMGHHVTISSSSDKKKVEALDHLGANEYLVSSNLATMEQAT DSFHYIIDTVRVNHLLEPYLSLLKFDRKLILMGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10003787 [exp]	0	1
					Lus10000297 [exp]	13.4	0.8397
					Lus10001189 [exp]	19.0	0.8397
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10004897 [exp]	19.3	0.8278
ATCG00830		ATCG00830.1, RP...	ribosomal protein L2 (.1)		Lus10001687 [exp]	19.8	0.8278
ATCG00500		ATCG00500.1, AC...	acetyl-CoA carboxylase carboxy...		Lus10002473 [exp]	29.5	0.8194
ATCG00180		ATCG00180.1, RP...	DNA-directed RNA polymerase fa...		Lus10009499 [exp]	30.2	0.8236
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10001341 [exp]	33.3	0.8061
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039149 [exp]	38.1	0.8063
AT4G34760			SAUR-like auxin-responsive pro...		Lus10012189 [exp]	38.3	0.7749
ATCG00160		ATCG00160.1, RP...	ribosomal protein S2 (.1)		Lus10013628 [exp]	40.4	0.7885

Compare expression of checked genes

Lus10003787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.