Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13850 152 / 5e-45 AS2 LBD22 LOB domain-containing protein 22 (.1) AT3G47870 121 / 2e-32 AS2 ASL29, SCP, LBD27 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) AT1G72980 111 / 7e-30 AS2 LBD7 LOB domain-containing protein 7 (.1) AT5G63090 97 / 1e-24 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT3G27650 90 / 3e-22 AS2 LBD25 LOB domain-containing protein 25 (.1) AT2G30130 90 / 7e-22 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT1G65620 90 / 1e-21 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT1G31320 86 / 2e-20 AS2 LBD4 LOB domain-containing protein 4 (.1) AT3G26620 83 / 6e-20 AS2 LBD23 LOB domain-containing protein 23 (.1) AT3G26660 83 / 6e-20 AS2 LBD24 LOB domain-containing protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002513 [exp] 279 / 7e-95 AT3G13850 161 / 1e-48 LOB domain-containing protein 22 (.1) Lus10013510 [exp] 126 / 3e-35 AT3G13850 143 / 1e-41 LOB domain-containing protein 22 (.1) Lus10008629 [exp] 120 / 4e-32 AT3G47870 175 / 2e-52 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10033111 [exp] 115 / 4e-30 AT3G47870 194 / 5e-60 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10036665 [exp] 110 / 1e-28 AT3G47870 182 / 2e-55 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10027676 [exp] 95 / 9e-24 AT5G63090 233 / 8e-79 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10039940 [exp] 95 / 9e-24 AT5G63090 236 / 5e-80 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10031191 [exp] 94 / 1e-23 AT1G31320 199 / 2e-66 LOB domain-containing protein 4 (.1) Lus10031855 [exp] 94 / 2e-23 AT2G30130 220 / 4e-74 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G039700 [exp] 187 / 1e-57 AT3G13850 184 / 6e-56 LOB domain-containing protein 22 (.1) Potri.001G196400 [exp] 176 / 6e-54 AT3G13850 184 / 3e-57 LOB domain-containing protein 22 (.1) Potri.015G066700 [exp] 134 / 7e-38 AT3G47870 191 / 2e-59 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Potri.012G072000 [exp] 124 / 3e-34 AT3G47870 180 / 7e-55 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Potri.006G228301 [exp] 104 / 2e-26 AT1G31320 111 / 1e-29 LOB domain-containing protein 4 (.1) Potri.018G052700 [exp] 97 / 2e-24 AT3G13850 85 / 1e-19 LOB domain-containing protein 22 (.1) Potri.012G083500 [exp] 96 / 5e-24 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.015G082200 [exp] 96 / 5e-24 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.001G345700 [exp] 94 / 9e-24 AT3G27650 208 / 5e-70 LOB domain-containing protein 25 (.1) Potri.005G097800 [exp] 92 / 3e-23 AT1G31320 193 / 6e-64 LOB domain-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [flax] [poplar] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Lus10003789 pacid=23162680 polypeptide=Lus10003789 locus=Lus10003789.g ID=Lus10003789.BGIv1.0 annot-version=v1.0 ATGAGCAGCAATACATCTCCTATTTCTATCAGCACAACCACAACCACCAATAGCAATAGTAATAGCAGTACCAATAGCAATACCAAGAACAACAATAACA ACATCTCTAGAATTGGCAACGGCGGCACCACACCTGCCTGCGCTGCATGCAAATACCAACGTAGAAAGTGCGCCCCTGATTGCATTCTCGCCCCCTACTT CCCCCACGATCGTCAACGTCAATTCCTCAACGTCCACAAGCTTTTTGGTGTCAGGAAGATCACCAAGATAATTGAGAACCTTGCGACGCAGGCTCATAAG GATGAGGCTATGCGCTCCATCATTTTCCAGTCTGATGTTCGAGCCAATGACCTTGTTGGTGGCTGCTACCGCATCGTTCTCGAACTCCAACGCCAGATTA ACTATGCACAGGCCGAGCTTGATCTTCTCCTTCACCATCTCGCCATATATCAGCAACAACAGCACCATCAAAATCAACATCAACAACAAGATCAAACTAC GATCGAAACCAACATTGATTCTGCAATGATGGCAGCTGTTGGGTGCATGGATGTTTACACTGATCCCATGTTTTTGCAGTTTCATTGTTCCCTGCAGCAG CAGCCACAACAACAGTCCGATCATGAAGAACAGCAGCATCACCACCACCACCATCACCACCATCATCATCAAAACCAACAACAACAACATCATCAGCTTC ATGGGTATGCTGTTGAAGACACATTGCAAGATGGCGACAGCGTCAATTCCTGGGGGATGGCTGCTGGTGGCTGA
AA sequence Show only first row Show all	>Lus10003789 pacid=23162680 polypeptide=Lus10003789 locus=Lus10003789.g ID=Lus10003789.BGIv1.0 annot-version=v1.0 MSSNTSPISISTTTTTNSNSNSSTNSNTKNNNNNISRIGNGGTTPACAACKYQRRKCAPDCILAPYFPHDRQRQFLNVHKLFGVRKITKIIENLATQAHK DEAMRSIIFQSDVRANDLVGGCYRIVLELQRQINYAQAELDLLLHHLAIYQQQQHHQNQHQQQDQTTIETNIDSAMMAAVGCMDVYTDPMFLQFHCSLQQ QPQQQSDHEEQQHHHHHHHHHHHQNQQQQHHQLHGYAVEDTLQDGDSVNSWGMAAGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10003789 [exp]	0	1
AT3G47570			Leucine-rich repeat protein ki...		Lus10033362 [exp]	2.0	0.8006
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10017777 [exp]	2.2	0.8055
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10007340 [exp]	4.5	0.7875
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10015595 [exp]	4.9	0.7881
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10014885 [exp]	5.0	0.7782
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10001465 [exp]	9.2	0.7633
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10017004 [exp]	10.4	0.7646
AT5G66650			Protein of unknown function (D...		Lus10005312 [exp]	12.5	0.7121
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10013477 [exp]	13.7	0.7166
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Lus10035802 [exp]	13.8	0.7205

Compare expression of checked genes

Lus10003789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.