Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17630 659 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G20230 411 / 4e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 385 / 5e-123 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 382 / 2e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16860 374 / 1e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 362 / 8e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 359 / 1e-112 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 356 / 4e-112 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15930 352 / 2e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 348 / 7e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002512 [exp] 400 / 2e-133 AT1G17630 336 / 5e-109 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10033026 [exp] 381 / 1e-121 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040917 [exp] 383 / 3e-119 AT4G01030 898 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018223 [exp] 369 / 3e-117 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 366 / 1e-116 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 364 / 1e-114 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030053 [exp] 361 / 4e-114 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 360 / 1e-113 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040680 [exp] 358 / 4e-113 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G021300 [exp] 393 / 2e-126 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 384 / 6e-123 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 382 / 1e-120 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 372 / 2e-117 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 370 / 2e-117 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 365 / 6e-115 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G027800 [exp] 365 / 6e-115 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 362 / 3e-114 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G074700 [exp] 360 / 6e-114 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 359 / 1e-113 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003790 pacid=23162679 polypeptide=Lus10003790 locus=Lus10003790.g ID=Lus10003790.BGIv1.0 annot-version=v1.0 ATGCGTCATATTTCTGCTTCTCGACGTCTTACTAATTATGCTCCGTCTGTCACTCGCCTGGCTATTTCCCTTCTCCGTCGTTACCAAACCCAAATCACGC CGATCCAGCCTTTCTATATCCACGCCGAGTTTCTTAATTCATTGGATCGTGTTCTTCAATGTTGTGCCAGGCTTCAGCAATGCGAGCAAGTTCACGCGAA TATCATTGTTTCGGGGAGCACTGGATCTGCTTTCCTTGGTTCCTTGTTGGTATCTACTTACGCCCGCTTCGGGCGTCTCTCGGATGCACAGATGGTTTTC GACGCTGCACCACTGGTGTGCTTTTCCAATTTACTTTTCTGGAATTCCATTCTGAGAGCTAATGTGACTGGTGAATCCTATGCAAATACGTTGAGACTGT ATGTAAGGATGCGAAATATGGGAAATTTAGGCGATGGTTTCACTTTCCCTTTGGTGATTCGGGCTTGTAAGTACTTGGGTAGCAGCAGCTCCAAGCTGTG TGACGCTGTTCATTGTCACGCTTTGGAGGCTGGGTTTCGGAACCATCTTCATGTTTCCAATGAGTTGATTGGAATGTACTCGAAACTGGAACGGATGGAT GATGCAGGCAAAGTGTTTGATAGAATGGGTGTGAGAACCACTTTGTCGTGGAATATGATGGTTTCTGGGTTTTCCTTTAATTGTGATGGTGCTGGTGCTC TTGAGATTTTCCAGAGGATGGAATCTGAAGGTTTACAACCTAATCTCGTGACATGGACATCTCTGATGTCAAGTCATGCTCGTTCTGGATTGTATCTGGA AACTCTGACGTTATTTTGTTTGATGCGAAAGAGGGGAATCGGGGTGACTGCCGAAGCACTTTCTGTGATATTGTCTGTTTGTTCTGCTCTGGATGCATTT TGTTCGGGGAGGTCCATACATAGTCTTGTCCTGAAGGATGGTTTCAAAGATTATTTGTTTGTCAAACATGCACTTATATGTTTATATGGCAAGAGTGGCA ATCCGATGGATGCTCGCAGCTTGTTCGACGAAATTGAAAACAAGAATATAGTAAGTTGGAATGCTCTGATAACATCCTACACTGATGCTGGCCTATGTGA TGAGGCGTTACAAATATTTGTTGAGCTAGATAGATCAGTAAATTCTCAAATGATGAGAGCTAATCTAGTGAGCTGGACTGCTTTAATTAGTGGGTTCGCT TCAAATGGGAGAGGGGAAGAGGCCTTGTATCTTTTCCGCCAAATGCAGTGTGCCAATGTCACGTCAACTCCTGTAACAGCTTGTAGCGTCTTATCAGCGT GTGCAGAGTTGTCTGCACTGAATCTGGGCAAGGAAATCCATGGATACACCACAAGAAGTTTTATGAGCAACAGTATACTGGTTCAAAATGGTTTGATTGA CATGTATGCCAAATGTGGAAGCTTGAGAGAAGGGCATCTAATATTCGAGAAACTTGAGAGGAAAGATCTGATTTCATGGAATTCCATGATCAAAGGATTT GGGATGCATGGATTTGGTCTCAATGCTCTAGACACCTTCAATGATATGATTACTTGTGGCCATCGCCCAGATGGGATCACCTTTGTATCAGTTCTTTCTG CTTGTAGTCATGCCGGACTTATTGATGAGGGTCGTTTGCTTTTTGATAAGATGATTAAAGACTACCTCATTGAACCAAAGATGGAGCACTACGCTTGCAT GGTTGATCTGCTAGGCCGCTCAGGGTTACTGGAAGAGGCAAGTGACGTTGTGAAGAATATGCCTATGGAACCTAATGCTTATGTATTGGGTGCACTTTTA AACTCATGCAGAATGCACAAAAATACTCTAGTTGCAGACAATATTGCATCTCGAATGTTTAGCTTCGGTCCCAAGACTGCTTGGAGCTACATGTTACTGT CAAATATATATGCTGCTAGTGGTAGATGGGAGGATTCTGCTAAAACCAGAGTCTCAGCGAGGACAAAAGGCTTAAAGAAAATCCCTGGCGAGAGTTGGAT TGAAGTGAACAAGATCTTCCATAAGTTTTCAGCAGGTGACAACGTGAAAGGGGATTCAGAAGAAATCTGTAGGGTTCTTGAGGAACTGACTCTTCAAATG CAGGATATCTCCATTAACAATACAATTCCAGGGATCAGTGATGCTGAGTGCATGGGTAAGGAAATCATGCTAGAGAACTACTCCGAAGATTATCATTAG
AA sequence Show only first row Show all	>Lus10003790 pacid=23162679 polypeptide=Lus10003790 locus=Lus10003790.g ID=Lus10003790.BGIv1.0 annot-version=v1.0 MRHISASRRLTNYAPSVTRLAISLLRRYQTQITPIQPFYIHAEFLNSLDRVLQCCARLQQCEQVHANIIVSGSTGSAFLGSLLVSTYARFGRLSDAQMVF DAAPLVCFSNLLFWNSILRANVTGESYANTLRLYVRMRNMGNLGDGFTFPLVIRACKYLGSSSSKLCDAVHCHALEAGFRNHLHVSNELIGMYSKLERMD DAGKVFDRMGVRTTLSWNMMVSGFSFNCDGAGALEIFQRMESEGLQPNLVTWTSLMSSHARSGLYLETLTLFCLMRKRGIGVTAEALSVILSVCSALDAF CSGRSIHSLVLKDGFKDYLFVKHALICLYGKSGNPMDARSLFDEIENKNIVSWNALITSYTDAGLCDEALQIFVELDRSVNSQMMRANLVSWTALISGFA SNGRGEEALYLFRQMQCANVTSTPVTACSVLSACAELSALNLGKEIHGYTTRSFMSNSILVQNGLIDMYAKCGSLREGHLIFEKLERKDLISWNSMIKGF GMHGFGLNALDTFNDMITCGHRPDGITFVSVLSACSHAGLIDEGRLLFDKMIKDYLIEPKMEHYACMVDLLGRSGLLEEASDVVKNMPMEPNAYVLGALL NSCRMHKNTLVADNIASRMFSFGPKTAWSYMLLSNIYAASGRWEDSAKTRVSARTKGLKKIPGESWIEVNKIFHKFSAGDNVKGDSEEICRVLEELTLQM QDISINNTIPGISDAECMGKEIMLENYSEDYH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10003790 [exp]	0	1
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	1.7	0.9423
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10014976 [exp]	2.4	0.9401
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10025048 [exp]	3.2	0.9260
AT1G36990			unknown protein		Lus10029655 [exp]	3.5	0.9346
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10018778 [exp]	6.0	0.9183
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10016048 [exp]	11.1	0.9273
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025168 [exp]	14.5	0.9256
AT2G30780			Tetratricopeptide repeat (TPR)...		Lus10029620 [exp]	14.7	0.8989
AT2G36350			Protein kinase superfamily pro...		Lus10035591 [exp]	15.0	0.8982
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10026545 [exp]	15.2	0.9218

Compare expression of checked genes

Lus10003790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.