Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13860 781 / 0 HSP60-3A heat shock protein 60-3A (.1) AT3G23990 685 / 0 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT2G33210 675 / 0 HSP60-2 heat shock protein 60-2 (.1.2) AT5G56500 396 / 1e-130 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT1G55490 394 / 5e-130 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT3G13470 390 / 2e-128 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT1G26230 360 / 4e-117 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT2G28000 356 / 3e-115 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT5G18820 285 / 3e-88 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011898 [exp] 694 / 0 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011902 [exp] 694 / 0 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10022832 [exp] 686 / 0 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011770 [exp] 677 / 0 AT3G23990 994 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10013404 [exp] 395 / 5e-130 AT3G13470 1037 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10010321 [exp] 394 / 2e-129 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10037386 [exp] 355 / 6e-115 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10030917 [exp] 353 / 1e-113 AT1G26230 863 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Lus10041329 [exp] 312 / 9e-99 AT2G28000 845 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G039475 [exp] 760 / 0 AT3G13860 810 / 0.0 heat shock protein 60-3A (.1) Potri.001G054400 [exp] 693 / 0 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G173900 [exp] 692 / 0 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.002G252900 [exp] 690 / 0 AT3G23990 995 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G222400 [exp] 405 / 6e-134 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.001G002500 [exp] 401 / 2e-132 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.009G009300 [exp] 370 / 6e-121 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.004G213400 [exp] 369 / 3e-120 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.010G135100 [exp] 362 / 2e-117 AT1G26230 813 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Potri.015G122800 [exp] 320 / 2e-101 AT5G18820 821 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10003791 pacid=23162677 polypeptide=Lus10003791 locus=Lus10003791.g ID=Lus10003791.BGIv1.0 annot-version=v1.0 ATGTCAATAAGACAACAATCCTTCCATGGATTCTTCAAGACGTTAGAAAAAGAAAGTAAAAACCCCAGAAAAACCCTACTCCTCTATCACTCAAAGCTTC AGCTCAACTGCTCAAGCATTTCTGCGTACTCAGTCCTGCAATCCTCCATAGTATTCTTCACTCTATCGGATCATCATGTACAGAATAGCTTCAAGGCTGA CTTCTTCAGTGTGGTTTATAGTAGGGTGATCAGTTACAGAAGTTATGTAGCAAAGGATATCAATTTTGGGGTTGGTGCTCGTGCAGCAATTCTGCAAGGC GTTAATGATGTGGCAGAAGCTGTAAAAGTCACAATGGGACCAAAGGGCCGCAATGTAATCATTGAGAAAAACCATGGAAGTCCGAAGGTAACCAAGGATG GAGTTACCGTTGCTAAAAGCATTACATTTAAGGACAAGGGCAAGAATATCGGTGCTGAGCTCGTAAAGCAGGTTGCTAATGCAACTAATACTGCTGCAGG GGATGGTACTACGTGTGCAACTGCCCTCACCCAGGCAATACTTGGGGAAGGCTGCAAATCTGTAGCTGCGGGTGTAAATGTGATGGACTTGCGTAGTGGT ATTAATATGGCTGTTGATGCTGTTGTTTCTGATTTGAAAAAGAGAGCAGTTGGCACAATTTCTGCGAATGGTGAGCGTGAGATTGGAGAACTGATAGCAA GAGCAATGGAGAAAGTAGGAAAGGAAGGTGTAATCACTGTTGCAGATGGAAATACGTTGGATAATGAGTTGGAAGTGGTGGAAGGATTGAAGTTAGCTCG GGGCTACATTTCTCCCTACTTTATTACTGATCAGAAGACCCAAAAATGCGAACTTGAGAATCCTTTGATTCTCATCCATGAAAAGAAAATTACAGACATG GCCTCCCTTGTGAAAATATTGGAGTTCGCAGTGAATAAAAACAGGCCCCTTCTTATGGTGTCTGAAGATGTGGATAGTGAAGCGTTGGCTATGCTTATAC TCAACAAGCATCATGCAGGAGTCAAGGCCAGATTTACTGTGTGTGCTATTAAAGCTCCCGGTTTTGGAGAAAACAGACGTGCAAGCTTGGATGATCTTGT TGTTTTCACTGGTGGAGAGGTTCTCAGCGAAGATCGTGGTTTAACTCTTGACAAATTCCAGCCTGAAATGTTTGGCCGTGCTAAAAAGGTTACTGTATCT CTTGATGACACAATAATCATGCATGGTGGTGGGGATAAACAACTGATTGAAGAAAGATGTAAGCAGCTTAGGACAGCCATGGAGAAGAGCACCTCGATGT TCGACAAGGAAAAGGCACAAGAGAGGTTGTCAAAATTGTCTGGTGGCGTTGCTGTGTTCAAGGTCGGTGGTGCGAGTGAAGTAGAAGTTGGAGAAAAGAA GGATAGAGTAACAGATGCATTGAATGCTACGAAAGCGGCAGTTGAAGAGGGCATTGTTCCAGGTGGTGGTGTTGCTCTTCTGTATGCTTCAAAAGCTCTG GACAACCTTAAAGCTGCCAACGAGGATCAGAAAAGAGGCATCCAAATAATTCAGAATGCTCTTAAAGCACCTGCACAGACGATAGTATCAAATGCCGGTT TCGATGCTGCTGTTGTTGTTGGGAAATTGTTGGACCAGGAAAACCACAACTTTGGTTACGATGCTGCGAAAGGTGATTATGTGGACATGGTGAAAGCCGG AATCGTCGATCCCCTCAAAGTTGTGAGGACAGCATTAGTAGATGCCGCAAGTGTGTCTTTGCTGTTGACAACAACTGAGGCTGCCGTGACGGAGAGTCGG AATGAGAAACCTCCCAGTCGTGTGCCAGACATGAATGATATGTACTAA
AA sequence Show only first row Show all	>Lus10003791 pacid=23162677 polypeptide=Lus10003791 locus=Lus10003791.g ID=Lus10003791.BGIv1.0 annot-version=v1.0 MSIRQQSFHGFFKTLEKESKNPRKTLLLYHSKLQLNCSSISAYSVLQSSIVFFTLSDHHVQNSFKADFFSVVYSRVISYRSYVAKDINFGVGARAAILQG VNDVAEAVKVTMGPKGRNVIIEKNHGSPKVTKDGVTVAKSITFKDKGKNIGAELVKQVANATNTAAGDGTTCATALTQAILGEGCKSVAAGVNVMDLRSG INMAVDAVVSDLKKRAVGTISANGEREIGELIARAMEKVGKEGVITVADGNTLDNELEVVEGLKLARGYISPYFITDQKTQKCELENPLILIHEKKITDM ASLVKILEFAVNKNRPLLMVSEDVDSEALAMLILNKHHAGVKARFTVCAIKAPGFGENRRASLDDLVVFTGGEVLSEDRGLTLDKFQPEMFGRAKKVTVS LDDTIIMHGGGDKQLIEERCKQLRTAMEKSTSMFDKEKAQERLSKLSGGVAVFKVGGASEVEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKAL DNLKAANEDQKRGIQIIQNALKAPAQTIVSNAGFDAAVVVGKLLDQENHNFGYDAAKGDYVDMVKAGIVDPLKVVRTALVDAASVSLLLTTTEAAVTESR NEKPPSRVPDMNDMY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Lus10003791 [exp]	0	1
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	1.4	0.8195
AT5G13830			FtsJ-like methyltransferase fa...		Lus10023402 [exp]	1.7	0.8095
AT5G38890			Nucleic acid-binding, OB-fold-...		Lus10003098 [exp]	3.2	0.7888
AT1G18010			Major facilitator superfamily ...		Lus10043370 [exp]	6.8	0.8103
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10040106 [exp]	9.9	0.7800
					Lus10019128 [exp]	11.0	0.7647
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10011934 [exp]	12.0	0.7981
AT3G43610			Spc97 / Spc98 family of spindl...		Lus10003353 [exp]	13.3	0.7524
AT3G19508			unknown protein		Lus10013875 [exp]	14.4	0.7394
AT5G37590			Tetratricopeptide repeat (TPR)...		Lus10004034 [exp]	15.3	0.7814

Compare expression of checked genes

Lus10003791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.