Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12570 404 / 1e-134 UPL5 ubiquitin protein ligase 5 (.1) AT1G55860 138 / 1e-35 UPL1 ubiquitin-protein ligase 1 (.1.2) AT1G70320 136 / 5e-35 UPL2 ubiquitin-protein ligase 2 (.1) AT3G17205 92 / 6e-20 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT3G53090 91 / 1e-19 UPL7 ubiquitin-protein ligase 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010493 [exp] 595 / 0 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10027324 [exp] 360 / 9e-123 AT4G12570 373 / 1e-121 ubiquitin protein ligase 5 (.1) Lus10032830 [exp] 141 / 1e-36 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 135 / 2e-34 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 130 / 5e-33 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10039026 [exp] 91 / 1e-21 AT4G12570 97 / 7e-24 ubiquitin protein ligase 5 (.1) Lus10035589 [exp] 94 / 1e-20 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10008636 [exp] 80 / 5e-16 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10002470 [exp] 74 / 2e-15 AT2G22610 64 / 3e-12 Di-glucose binding protein with Kinesin motor domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G059800 [exp] 478 / 6e-164 AT4G12570 733 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G012900 [exp] 479 / 5e-163 AT4G12570 853 / 0.0 ubiquitin protein ligase 5 (.1) Potri.006G011701 [exp] 474 / 3e-161 AT4G12570 842 / 0.0 ubiquitin protein ligase 5 (.1) Potri.002G110500 [exp] 143 / 3e-37 AT1G55860 1125 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 132 / 1e-33 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.001G368600 [exp] 132 / 2e-33 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.016G096500 [exp] 102 / 2e-23 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2) Potri.010G150000 [exp] 87 / 1e-18 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.008G101300 [exp] 81 / 2e-16 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0552 [flax] [poplar] Hect PF00632 [flax] [poplar] HECT HECT-domain (ubiquitin-transferase)
Representative CDS sequence Show only first row Show all	>Lus10003792 pacid=23145954 polypeptide=Lus10003792 locus=Lus10003792.g ID=Lus10003792.BGIv1.0 annot-version=v1.0 ATGATGATGTTCCCCGAGGTGAAAGAAGACTATGAAGAGCTGCATGAAATGCTTATTGACAGGGCTAACCTGCTGGAGGAGTCATTTGCATACATTGGTC GTGCAGAACCAGATTCATTGCATGGAGGTTTGTTTATGGAGTTCAAGAATGAGGAAGCTACTGGTCCTGGTGTATTACGTGAGTGGTTTCTTTTGGTAAC ACAGGCTATTTTCAACCCTCATAATGCTCTTTTTCTAGCATGCCCAAGTGATCGCAAAAGGTTCCACCCTAATCCTGCATCAAAGGTTGAACCTAGGCAT CTAGAGTATTTCGCCTTTTCCGGTCGAGTGATTGCATTAGCTGTGATGCACAAAGTGCAAGTGGGCATAGTCCTAGATCGGGTCCTTTTCTTACAATTAG CTGGAGGGCCTATATATTTGGAAGACATAAAGGATGCTGATCCGATCCTGTACAGTAGCTGCAAGCAAATCCTGGACATGGATGCCGAGTTTATTGATTC CGATGCTTTAGGGCTGACATTTGTTAGAGAAGTCGAGGAGTTGGGATCCAGGAACGTTGTTGAACTCCGTCCTGGAGGGAAACACATCGTAGTGAATAGC AAGAACAGAGGGGAATATGTAACCCTTCTGGTTCGGCATCGATTTGTCACATCTATCTCTGAACAGGTTTCGCATTTTGCAAAAGGATTCACTGATATTC TTTCCAATGGAAGTCTCAGACACTCTTTTTTCCAAAGCTTGGAGCTAGAAGACCTTGATTGGATGCTTTACGGAAGTGAAAGCGCAATCTGTGTTGAAGA CTGGAAGGCACATACGGAGTACAATGGCTTCAAAGAAACAGATCCCCAAATATCCTGGTTCTGGAAGCAACTTCTGCCTCTGTTGCAGCTGTCTCTTCAG CCGGCTCCTGTACTGGCGCCACCACAGCTGCTGCAACTGGTTCTTCAGCTGGAGCAACAGCTGGCTCCTCAGCAACGGCCGGCTCGGCTGCAGCTTCCGC TTCCGGCGCCTCTTCCTCAACTGTGGCGGCAACAGAAGCTGGCTCCTCAACCTTCTCGGCTTCAGCTTCTACTTCCTTAA
AA sequence Show only first row Show all	>Lus10003792 pacid=23145954 polypeptide=Lus10003792 locus=Lus10003792.g ID=Lus10003792.BGIv1.0 annot-version=v1.0 MMMFPEVKEDYEELHEMLIDRANLLEESFAYIGRAEPDSLHGGLFMEFKNEEATGPGVLREWFLLVTQAIFNPHNALFLACPSDRKRFHPNPASKVEPRH LEYFAFSGRVIALAVMHKVQVGIVLDRVLFLQLAGGPIYLEDIKDADPILYSSCKQILDMDAEFIDSDALGLTFVREVEELGSRNVVELRPGGKHIVVNS KNRGEYVTLLVRHRFVTSISEQVSHFAKGFTDILSNGSLRHSFFQSLELEDLDWMLYGSESAICVEDWKAHTEYNGFKETDPQISWFWKQLLPLLQLSLQ PAPVLAPPQLLQLVLQLEQQLAPQQRPARLQLPLPAPLPQLWRQQKLAPQPSRLQLLLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10003792 [exp]	0	1
					Lus10029450 [exp]	3.3	0.9195
AT2G47485			unknown protein		Lus10036328 [exp]	4.0	0.9157
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10013442 [exp]	13.7	0.9432
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10015079 [exp]	14.7	0.9131
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008534 [exp]	16.3	0.9154
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10021461 [exp]	17.1	0.9426
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10034971 [exp]	23.6	0.9348
					Lus10036535 [exp]	25.3	0.9341
AT3G19620			Glycosyl hydrolase family prot...		Lus10002128 [exp]	25.8	0.9273
AT2G42760			unknown protein		Lus10015227 [exp]	29.3	0.8330

Compare expression of checked genes

Lus10003792 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.