Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22370 86 / 4e-22 unknown protein AT5G41470 57 / 3e-10 Nuclear transport factor 2 (NTF2) family protein (.1) AT1G71480 45 / 3e-06 Nuclear transport factor 2 (NTF2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010491 [exp] 59 / 8e-11 AT3G07880 274 / 9e-93 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10041048 [exp] 53 / 9e-09 AT1G71480 238 / 7e-80 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10032294 [exp] 47 / 2e-06 AT5G41470 177 / 1e-54 Nuclear transport factor 2 (NTF2) family protein (.1) Lus10024664 [exp] 43 / 3e-05 AT5G41470 196 / 2e-61 Nuclear transport factor 2 (NTF2) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G013200 [exp] 128 / 2e-37 AT4G22370 114 / 6e-32 unknown protein Potri.019G074800 [exp] 50 / 6e-08 AT1G71480 249 / 2e-84 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.001G100500 [exp] 50 / 7e-08 AT5G41470 213 / 2e-68 Nuclear transport factor 2 (NTF2) family protein (.1) Potri.003G131500 [exp] 47 / 1e-06 AT5G41470 210 / 5e-67 Nuclear transport factor 2 (NTF2) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003793 pacid=23145975 polypeptide=Lus10003793 locus=Lus10003793.g ID=Lus10003793.BGIv1.0 annot-version=v1.0 ATGGAGAATTATTCTGAAGACAACGAGGATGATTTCCATAAGTTCGTATCGAATCTCCTTCCTTTTTTTTACCGACCTTTTCCCGGGAAACAGAATGTGG TTGAATTGTTAAATTACTTGAAGACCAATTTGGGAGACAACATTGAGTTTGTGATGAAACCCACATTACAACATGGAATCAATGTTGGCTTCACTTGGAG ATTGCAATGGAGCAAGACCATGTTTCCTTTGGGTAAAGGTTTTAGCTTCTACATTCACCAAATCTACCAAGGAAAGTTTTTGATAAGGAATGTAGAGATG CTTGTGAACCTTCCCTTTCACATGGAGCCTATCAAATTGAGATTTATGGCATTGGTGATGGGTATAATGGCCAAAATGTACGGTGTGGATTACAAACTCT CCCGATACGAGATCAAACGAGCCATGCTTGCTTTGCTCTTGATTGTTATTCTCTTGTTGTGTTTAAGTCCAGAGGTTTACTAG
AA sequence Show only first row Show all	>Lus10003793 pacid=23145975 polypeptide=Lus10003793 locus=Lus10003793.g ID=Lus10003793.BGIv1.0 annot-version=v1.0 MENYSEDNEDDFHKFVSNLLPFFYRPFPGKQNVVELLNYLKTNLGDNIEFVMKPTLQHGINVGFTWRLQWSKTMFPLGKGFSFYIHQIYQGKFLIRNVEM LVNLPFHMEPIKLRFMALVMGIMAKMYGVDYKLSRYEIKRAMLALLLIVILLLCLSPEVY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22370			unknown protein		Lus10003793 [exp]	0	1
					Lus10035048 [exp]	2.6	0.9695
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10000180 [exp]	4.0	0.9686
AT4G37445			unknown protein		Lus10001408 [exp]	5.2	0.9660
AT1G47271			Cystathionine beta-synthase (C...		Lus10001964 [exp]	5.7	0.9537
AT5G05570			transducin family protein / WD...		Lus10027810 [exp]	5.9	0.9564
AT1G79910			Regulator of Vps4 activity in ...		Lus10025779 [exp]	6.3	0.9616
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10020264 [exp]	6.6	0.9626
AT5G36930			Disease resistance protein (TI...		Lus10007852 [exp]	10.1	0.9601
					Lus10019472 [exp]	12.0	0.9477
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10024258 [exp]	12.2	0.8760

Compare expression of checked genes

Lus10003793 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.