Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07880 300 / 2e-104 SCN1 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) AT1G62450 278 / 9e-96 Immunoglobulin E-set superfamily protein (.1) AT1G12070 272 / 2e-93 Immunoglobulin E-set superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027327 [exp] 345 / 3e-122 AT3G07880 303 / 2e-105 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10039029 [exp] 340 / 7e-120 AT3G07880 300 / 5e-104 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10010491 [exp] 336 / 2e-117 AT3G07880 274 / 9e-93 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10001732 [exp] 310 / 2e-108 AT3G07880 310 / 6e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10002272 [exp] 308 / 3e-107 AT3G07880 309 / 1e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10006400 [exp] 301 / 2e-104 AT3G07880 313 / 1e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10012352 [exp] 297 / 6e-103 AT3G07880 308 / 6e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G010500 [exp] 325 / 1e-113 AT3G07880 317 / 5e-110 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.016G013700 [exp] 322 / 2e-112 AT3G07880 314 / 5e-109 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G223200 [exp] 303 / 4e-105 AT3G07880 328 / 2e-114 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.014G163000 [exp] 301 / 4e-104 AT3G07880 329 / 7e-115 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G234600 [exp] 252 / 4e-85 AT3G07880 212 / 5e-69 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G259200 [exp] 194 / 2e-62 AT3G07880 184 / 4e-58 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF02115 [flax] [poplar] Rho_GDI RHO protein GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Lus10003794 pacid=23145957 polypeptide=Lus10003794 locus=Lus10003794.g ID=Lus10003794.BGIv1.0 annot-version=v1.0 ATGGAGAAAAATGAGGGTGAAACTGTAGGAGAAAAAGTGGTTGAACAAGAGGATCATGGCAAGGATCATGAGGAAGAAGAAGATGAAGATCATGAAGATA GGAAGATTGAAGTTGGTCCTCAATACACACTTAAAGAACAACTCGAAAAGGATAAGGACGATGAGAGCTTGAGGAGGTGGAAGGAGCAACTCATAGGAGC TGTGGATATCGAAACTGTTGGAGAGACTCTCGATCCAGAAGTCAAGATCTTGAGCCTAGCAATCAAGTCCCCAGGAAGGGACGACATTGTTCTCCCGATC CCCGCAAATGAAGATCCAAAAGGATGTTGGTTCACTTTGAAAGAAGGCTCTCGATACAGCTTACTCTTCACCTTCGAAGTGAAAAATAACATCGTATGTG GCCTTCGATACACCAACACGGTTTGGAAAACCGGAGTCAAAGTTGATAGTACAAAAGAGATGCTTGGAACTTTTAGTCCTCAAGCAGAAACTTACACTCA TGAGATGCTTGAGGAGACCACTCCTTCCGGCATGTTTGCTAGAGGCTCATACTCGGCTAGAAGTAAGTTTGTTGATGACGACAACAAGTGTTACTTGGAG ATCAATTACACCTTTGATATTCGTAAAGAATGGATGGCAACTTAA
AA sequence Show only first row Show all	>Lus10003794 pacid=23145957 polypeptide=Lus10003794 locus=Lus10003794.g ID=Lus10003794.BGIv1.0 annot-version=v1.0 MEKNEGETVGEKVVEQEDHGKDHEEEEDEDHEDRKIEVGPQYTLKEQLEKDKDDESLRRWKEQLIGAVDIETVGETLDPEVKILSLAIKSPGRDDIVLPI PANEDPKGCWFTLKEGSRYSLLFTFEVKNNIVCGLRYTNTVWKTGVKVDSTKEMLGTFSPQAETYTHEMLEETTPSGMFARGSYSARSKFVDDDNKCYLE INYTFDIRKEWMAT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10003794 [exp]	0	1
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10040120 [exp]	3.0	0.8763
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024300 [exp]	5.2	0.8688
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10040175 [exp]	9.3	0.8711
AT1G60970			SNARE-like superfamily protein...		Lus10025383 [exp]	10.0	0.8235
AT3G19550			unknown protein		Lus10013900 [exp]	13.9	0.8682
					Lus10033284 [exp]	17.0	0.8522
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10033882 [exp]	19.3	0.8508
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10039268 [exp]	20.2	0.8438
AT2G25625			unknown protein		Lus10013129 [exp]	21.8	0.8506
AT2G39650			Protein of unknown function (D...		Lus10020938 [exp]	23.2	0.8208

Compare expression of checked genes

Lus10003794 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.