Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22350 707 / 0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) AT4G22285 705 / 0 Ubiquitin C-terminal hydrolases superfamily protein (.1) AT4G22410 533 / 0 Ubiquitin C-terminal hydrolases superfamily protein (.1) AT3G14400 69 / 3e-12 UBP25 ubiquitin-specific protease 25 (.1) AT5G22030 64 / 2e-10 UBP8 ubiquitin-specific protease 8 (.1.2) AT2G40930 60 / 3e-09 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT4G10570 56 / 4e-08 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 56 / 5e-08 UBP10 ubiquitin-specific protease 10 (.1.2) AT1G32850 56 / 6e-08 UBP11 ubiquitin-specific protease 11 (.1) AT5G57990 55 / 1e-07 UBP23 ubiquitin-specific protease 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010490 [exp] 1020 / 0 AT4G22350 714 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) Lus10027746 [exp] 394 / 4e-135 AT4G22285 321 / 9e-107 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10027745 [exp] 210 / 2e-64 AT4G22285 150 / 2e-42 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10035547 [exp] 207 / 2e-64 AT4G22285 154 / 9e-45 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10035548 [exp] 132 / 7e-36 AT4G22410 102 / 3e-26 Ubiquitin C-terminal hydrolases superfamily protein (.1) Lus10013369 [exp] 69 / 5e-12 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 69 / 5e-12 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013726 [exp] 67 / 2e-11 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10005591 [exp] 67 / 3e-11 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G014000 [exp] 797 / 0 AT4G22350 699 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) Potri.006G010100 [exp] 797 / 0 AT4G22350 734 / 0.0 Ubiquitin C-terminal hydrolases superfamily protein (.1.2) Potri.011G112800 [exp] 77 / 2e-14 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.001G394600 [exp] 72 / 4e-13 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.016G031900 [exp] 67 / 3e-11 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.018G017000 [exp] 64 / 1e-10 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.006G201100 [exp] 64 / 1e-10 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.001G214800 [exp] 64 / 2e-10 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G033800 [exp] 64 / 2e-10 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.006G266100 [exp] 59 / 5e-09 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase CL0229 [flax] [poplar] RING PF02148 [flax] [poplar] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein
Representative CDS sequence Show only first row Show all	>Lus10003795 pacid=23145967 polypeptide=Lus10003795 locus=Lus10003795.g ID=Lus10003795.BGIv1.0 annot-version=v1.0 ATGGTGGACGAAGAAGGTTCGACGAAGAGACAGAGAGTTCAGAAAGAAGGTTCATCTCCGACTCAGGCTATTGATAATCCTCTAGTTCCATACAATGATG TGGATGACGAGGAAGAGAATGGAAAGAGCGAGCAGAAGAACAATGATGGTGAAGAAATGGATAACGTAGATAAGGTAGTAAGGAATGGTGATCAAGGAGG ACGTGATGAGGAGGATGATGATGACGAACTTGATCAACTAGAGGCTAGCATCCAGAGGCGGAGGAAGCAACTGGAACCTCGCGAGGACTGTCCTTATCTA GACACTGTGAATCGCCAGGTGCTGGATTTCGATTTCGAGAAGTTTTGTTCAGTGTCGCTGTCGAATCTGAATGTCTATGCGTGTCTGGTCTGTGGGAAGT ATTACCAAGGGAGGGGGAAGAAGTCTCATGCGTACACTCACAGTCTTGAAGCAGGGCACCATGTGTATATCAACTTACAGACTGAGAAGGTGTACTGTCT TCCTGACGGATATGAGATCATTGATCCATCTTTGGATGACATACGACATGTGCTGAATCCGAGGTTTACAAAGGAACAAGTTGAGCAGTTGGATAAGAAC AAACAATGGTCTAGGGCACTTGATGGTTCCGATTACCTTCCGGGAATGGTTGGCCTCAATAACATCCAGGGAACTGACTTTGTGAATGTCACAATTCAGT CTCTGATGAGGGTAACACCTCTAAGAAATTTCTTCCTCATTCCGGAAAACTACGAGAAATCCCGGTCCATTCTCGTTCAACGTTTCGGGGAGCTGACACG AAAGATATGGCATGCTCGAAACTTTAAGGGACAGGTGAGCCCTCATGAGTTTCTTCAAGCAGTTATGAAAGCCAGCGGTAAAAGGTTTCTCATAGGGCAG CAGTCTGACCCCTTGGAATTCATGCGATGGCTTCTCGACACACTTCATAAGGAGCTTAAAAGATTGAAGAAGAATAACAACATCATTCTCGATTGCTTCG AGGGAGAATTGGAAGTCATCAAAGAGTTCCCCCATGGTACAGATGGTGAGACTGAACATAACAACGCTCACAAGGAAACTTCGAGAATGACGTTCAAGAT GCTCGGTCTGGATTTGCCACCACCTCCGTTGTTTAAAGATGTGATGGAGAAGAATATTATTCCACAGGTTCCTTTATTCAACATCTTGAAGAAGTTTGAC GGAGAGACCATCACCGAAGTAGTAAGGCCTCATGTCGCGAGGATGAAGTACCGAGTCACCAGATTGCCAAAGTATCTTATTCTTCATATGCAACGATTCA AGAAGAACAACTTCTTCATCGAGAAGAACCCAACTCTAGTCAACTTTCCTGTGAAGAACTTGGAACTGAAAGATTATATCCCTCTGCCTACTCCGAAGGA CAAGAAACTCCGTTCGAAGTACGACTTGATAGCTAACATCGTCCATGATGGCAAGCCGAAGGAAGGCTTCTACCGAGCTTTTGTGCAGCGCAAGTCCGAA GAGCTATGGTATGAGATGCAGGATCTACACGTCTCCGAAACGCTTCCTCAGATGGTTGCTCTCTCTGAAGCTTATCTGCAGATATACGAGCAGCATCAGT ATTAA
AA sequence Show only first row Show all	>Lus10003795 pacid=23145967 polypeptide=Lus10003795 locus=Lus10003795.g ID=Lus10003795.BGIv1.0 annot-version=v1.0 MVDEEGSTKRQRVQKEGSSPTQAIDNPLVPYNDVDDEEENGKSEQKNNDGEEMDNVDKVVRNGDQGGRDEEDDDDELDQLEASIQRRRKQLEPREDCPYL DTVNRQVLDFDFEKFCSVSLSNLNVYACLVCGKYYQGRGKKSHAYTHSLEAGHHVYINLQTEKVYCLPDGYEIIDPSLDDIRHVLNPRFTKEQVEQLDKN KQWSRALDGSDYLPGMVGLNNIQGTDFVNVTIQSLMRVTPLRNFFLIPENYEKSRSILVQRFGELTRKIWHARNFKGQVSPHEFLQAVMKASGKRFLIGQ QSDPLEFMRWLLDTLHKELKRLKKNNNIILDCFEGELEVIKEFPHGTDGETEHNNAHKETSRMTFKMLGLDLPPPPLFKDVMEKNIIPQVPLFNILKKFD GETITEVVRPHVARMKYRVTRLPKYLILHMQRFKKNNFFIEKNPTLVNFPVKNLELKDYIPLPTPKDKKLRSKYDLIANIVHDGKPKEGFYRAFVQRKSE ELWYEMQDLHVSETLPQMVALSEAYLQIYEQHQY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	0	1
AT4G32910			unknown protein		Lus10011625 [exp]	2.4	0.8655
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	2.4	0.8633
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10024522 [exp]	3.5	0.8495
AT3G25440		LOH1	LAG One Homologue 1, RNA-bindi...		Lus10020391 [exp]	3.5	0.8241
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10041732 [exp]	4.0	0.8602
AT4G10925			Nuclear transport factor 2 (NT...		Lus10032407 [exp]	4.2	0.8131
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Lus10006281 [exp]	4.8	0.8783
AT2G45620			Nucleotidyltransferase family ...		Lus10009309 [exp]	8.1	0.8305
AT5G66180			S-adenosyl-L-methionine-depend...		Lus10028444 [exp]	9.5	0.8336
AT1G26190			Phosphoribulokinase / Uridine ...		Lus10030919 [exp]	10.0	0.8544

Compare expression of checked genes

Lus10003795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.