Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39445 171 / 1e-54 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1) AT1G61280 141 / 2e-43 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010489 [exp] 308 / 2e-108 AT2G39445 184 / 2e-59 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G134800 [exp] 182 / 3e-59 AT2G39445 222 / 5e-75 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1) Potri.014G043400 [exp] 130 / 6e-39 AT1G61280 159 / 7e-51 Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08510 [flax] [poplar] PIG-P PIG-P
Representative CDS sequence Show only first row Show all	>Lus10003796 pacid=23145966 polypeptide=Lus10003796 locus=Lus10003796.g ID=Lus10003796.BGIv1.0 annot-version=v1.0 ATGGAGGATAACGACGATGGTTACTCAGTGAACAGTCCACGGAGAGTTCTCAGCTTCTCGAAGACGAAGAAGAATCAGAGAGCTGTAGAACGAAGATCAG ATATCTTCAGTCCATCATCTGTCTCCGGTCCCAAACCTTCAGAAGTTTACGGTTTTGTTGGCATCATTACCACTGTCGTCGCCACAGTCATCTTCTTAGC ATGGGCGTATGTTCCTGAATCATGGCTGCACTCCATTGGCATCTATTACTACCCTAACAGGTACTGGGCATTAGCAATGCCGACTTATGGGATGGTGACA GTAGCTTTGGCACTCACTTTTTACATTGGTCTCAATTTCATCTCCACACCTTCCCCGACTTCGTTGTCCACGGTGTTCGACGAGTTTACTAGGGAAGCTG ACGAGGATGCCCAGCTGGAACTGCCACATCAGCAGCAGGCAATCAAGCCTATATCAGATATTCCAGTTTACGTTGTGAACAATCTCATGTTCAGAGACTC CACAGAAAATGTAATTTACTGA
AA sequence Show only first row Show all	>Lus10003796 pacid=23145966 polypeptide=Lus10003796 locus=Lus10003796.g ID=Lus10003796.BGIv1.0 annot-version=v1.0 MEDNDDGYSVNSPRRVLSFSKTKKNQRAVERRSDIFSPSSVSGPKPSEVYGFVGIITTVVATVIFLAWAYVPESWLHSIGIYYYPNRYWALAMPTYGMVT VALALTFYIGLNFISTPSPTSLSTVFDEFTREADEDAQLELPHQQQAIKPISDIPVYVVNNLMFRDSTENVIY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39445			Phosphatidylinositol N-acetylg...		Lus10003796 [exp]	0	1
AT3G62920			unknown protein		Lus10005942 [exp]	8.8	0.6816
AT4G38495			unknown protein		Lus10029400 [exp]	15.7	0.6953
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Lus10042019 [exp]	19.4	0.5770
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10000069 [exp]	23.5	0.6198
AT3G11760			unknown protein		Lus10013598 [exp]	27.2	0.6555
AT5G20180			Ribosomal protein L36 (.1.2)		Lus10019412 [exp]	29.5	0.6463
AT3G09500			Ribosomal L29 family protein ...		Lus10030314 [exp]	41.0	0.5870
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10036897 [exp]	44.3	0.6423
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Lus10040621 [exp]	48.5	0.6142
AT5G01075			Glycosyl hydrolase family 35 p...		Lus10018699 [exp]	53.7	0.6227

Compare expression of checked genes

Lus10003796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.