Plant FIBer expression Database

Lus10003797 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G40690 99 / 6e-26 unknown protein
AT2G41730 43 / 1e-05 unknown protein
AT5G24640 40 / 0.0002 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010488
[exp]
219 / 1e-73 AT5G40690 136 / 1e-40 unknown protein
Lus10015261
[exp]
120 / 1e-35 AT5G40690 82 / 2e-20 unknown protein
Lus10025381
[exp]
113 / 6e-33 AT5G40690 81 / 3e-20 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G336200
[exp]
124 / 4e-36 AT5G40690 147 / 2e-44 unknown protein
Potri.001G338100
[exp]
99 / 3e-27 AT5G40690 137 / 7e-42 unknown protein
PFAM info
Representative CDS sequence
>Lus10003797 pacid=23145956 polypeptide=Lus10003797 locus=Lus10003797.g ID=Lus10003797.BGIv1.0 annot-version=v1.0
ATGAAGAGAGAAGGAAGGCAACGTGGGATGGTAAGAACATACCCAATCTTACCATCTCCGATCAGCTCAAGACCTACTACCACCACCGGCGGCGAATCCC
CACCGCCAACGGCCGGCATCTTTGCCAAGGTTAGCCGCAAGCCCACCAACCATTCCAAGTTCACCGGTAAATGCAGGGTCCCACGATGTAAAGAGTGTCA
CATCCACCCATGTACCAAGTCCAAGGACAAGGCCAAAGGGACCCAGAAGTCCCGGTCCCGCGATGTTGTGTCCAGTAATAGATTGGCCACGTGGCGAGTT
GTAGATGGCGGCCACATGTCTAACTCTAATGGGGTTTCTGCTACCGTGATGTTGGACCGCTTAGTGGATGTAGATCGATATTTCGATGATGATGAAGTTT
GTCGAGAGATTGATGACGACTGTGATGATGACGATAAAATGGAGGAGCATATGAGCTTTTGTGATGTGGGTTTCGTGGTGGAGCAAGTTGAAGATTGGTG
CTTGGTGGAAGAATTGCAATGA
AA sequence
>Lus10003797 pacid=23145956 polypeptide=Lus10003797 locus=Lus10003797.g ID=Lus10003797.BGIv1.0 annot-version=v1.0
MKREGRQRGMVRTYPILPSPISSRPTTTTGGESPPPTAGIFAKVSRKPTNHSKFTGKCRVPRCKECHIHPCTKSKDKAKGTQKSRSRDVVSSNRLATWRV
VDGGHMSNSNGVSATVMLDRLVDVDRYFDDDEVCREIDDDCDDDDKMEEHMSFCDVGFVVEQVEDWCLVEELQ

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G40690 unknown protein Lus10003797
[exp]
0 1
AT5G40690 unknown protein Lus10010488
[exp]
3.5 0.9723
AT3G23240 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1... Lus10011829
[exp]
9.8 0.9597
AT2G15480 UGT73B5 UDP-glucosyl transferase 73B5 ... Lus10019833
[exp]
13.0 0.9709
AT4G35180 LHT7 LYS/HIS transporter 7 (.1) Lus10022642
[exp]
13.9 0.9695
AT3G09220 LAC7 laccase 7 (.1) Lus10035546
[exp]
16.5 0.9545
AT2G14095 unknown protein Lus10001300
[exp]
21.2 0.9587
AT2G02240 MEE66 maternal effect embryo arrest ... Lus10023207
[exp]
24.7 0.9611
AT2G20610 RTY1, RTY, HLS3... SUPERROOT 1, ROOTY 1, ROOTY, H... Lus10017703
[exp]
25.8 0.9630
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Lus10027614
[exp]
28.1 0.9589
AT1G20925 Auxin efflux carrier family pr... Lus10016046
[exp]
28.2 0.9560

Lus10003797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.