Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12050 664 / 0 fumarylacetoacetase, putative (.1) AT1G12060 201 / 3e-60 ATBAG5 BCL-2-associated athanogene 5 (.1) AT2G46240 50 / 4e-06 ATBAG6, BAG6 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010485 [exp] 837 / 0 AT1G12050 672 / 0.0 fumarylacetoacetase, putative (.1) Lus10010486 [exp] 423 / 9e-145 AT1G12060 201 / 6e-65 BCL-2-associated athanogene 5 (.1) Lus10012648 [exp] 52 / 1e-06 AT2G46240 157 / 1e-38 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10038064 [exp] 50 / 4e-06 AT3G29310 139 / 7e-36 calmodulin-binding protein-related (.1) Lus10010133 [exp] 49 / 2e-05 AT2G46240 67 / 5e-12 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1) Lus10026469 [exp] 45 / 0.0002 AT3G29310 140 / 3e-36 calmodulin-binding protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G009200 [exp] 690 / 0 AT1G12050 727 / 0.0 fumarylacetoacetase, putative (.1) Potri.016G014900 [exp] 212 / 3e-64 AT1G12060 159 / 6e-49 BCL-2-associated athanogene 5 (.1) Potri.003G167500 [exp] 92 / 2e-19 AT1G12060 88 / 1e-19 BCL-2-associated athanogene 5 (.1) Potri.002G166300 [exp] 56 / 1e-07 AT2G46240 140 / 2e-33 ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BCL-2-associated athanogene 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0377 [flax] [poplar] FAH PF01557 [flax] [poplar] FAA_hydrolase Fumarylacetoacetate (FAA) hydrolase family CL0377 [flax] [poplar] PF09298 [flax] [poplar] FAA_hydrolase_N Fumarylacetoacetase N-terminal CL0377 [flax] [poplar] PF02179 [flax] [poplar] BAG BAG domain
Representative CDS sequence Show only first row Show all	>Lus10003798 pacid=23145972 polypeptide=Lus10003798 locus=Lus10003798.g ID=Lus10003798.BGIv1.0 annot-version=v1.0 ATGGCGTCCTTCATCGACGTTCGTCCGGATTCCCATTTCCCTATCCAGAACCTCCCGTACGGTGTCTTCAAGCACAAGCCGAGTTGCCTGCCTCGTCCGG CTGTCGCCATCGGTGACTACGTTTTGGACCTCTCGGAGATCGCTCTCGCTGGCCTCTTCGACGGTCCTATCCTCGGTTCCTCCGACTGTTTCCTCCAGCC TAACTTGAACAAGTTCTTGTCTCTGGGAAGGCCTGCCTGGAAGGAAGCTCGTGCTACCCTTCAAAAGCTATTGTCATCTGAGCTTGTTTGTTACCATGAC ATGATGAATTTCTGTTCCTTGTCCACTGCAGCTAGTGAGCCAAAGTTGAGAGATGATGCTAGCTTGAGGGAGAAAGCGCTTTTGCCAATGAGTGAGGTGG AAATGCTGCTTCCTGTTGTGATTGGGGACTACTCGGACTTCTTCTCCTCCATGCATCATGCGAAGAACTGTGGAACCATGTTTCGTGGCCCTCAGAATCC AATTAATCTAAATTGGTTCCACCTCCCGATTGCATATCATGGCCGCGCATCTTCGATTGTTATTTCTGGGACAGATATAATCCGGCCACGAGGACAAGGC CCCCCAAGTGGAAGTTCAACACCATGCTTTGGACCTTCACAAAAGCTAGATTTTGAGCTAGAAATGGCTGCTATTGTTGGTCCTGGAAACGAGTTAGGAA AACCCATAGATGTTAACGAAGCAGCAGATCACATATTTGGGCTTGTACTGATGAATGACTGGAGTGCTAGAGACATTCAAGCATGGGAATATGTCCCTCT CGGGCCTTTCCTCGGCAAGAGTTTCAGTACCACGATATCTCCCTGGATCGTAACACTCGATGCCCTGGCACCTTTTACATGCGACGCCCCTAAACAGGAT CCTCCTCCTCTTCCTTATCTAGCTGAAAAGATCTCAAAAAACTACGACATTTCCTTGGAGGTCCAAGTCAAACCATCCGGACTTCAAGAGTCGAGTGTGG TTACAAGAACCAACTTCAATCACTTGTACTGGACTGTGACTCAACAGCTAGCACACCACACAGTGAACGGCTGCAACCTAAGGCCTGGCGACCTACTCGG AACAGGAACCATTAGCGGACCGGAGCCAGAATCTTACGGATGCTTACTAGAACTGACTTGGAACGGGCAAAACCCACTGTCGCTCAACGGCGCAACTCGA AAGTTCCTCGAAGATGGCGACGAAGTCACCATCACCGGCTTCTGCAAGGTCTGCAACTCTTCTCCACTGGACTCTCGCCATCTTCATTCATCTTCTCTTC TATCTGACTCGAACCATTCGATATTTCTATGCAGGGAGACGGTTACAATGTCGGATTCGGAAACTGTACTGGGAAAATCCTCCCTTCAAACAAGTCTTAG GTCTCAGCTTCTCGTATCCGCCACCGTCACCATGAGAGGATTTGAAGAATACAATCACTTCTCCACCACTGTCACCTACGCCTTCCACGACGATGTCCTT CCGGCGACTCCGATCACCACCAAGGAAATCCCGATCCAATCCTCTACTCCTCCCGCCACCGCCACCGACATCCCGGTTACCCTCCACCTTCCGGAACACC AGACGGCGGCGACCAAGATCCAGTCGGCGTACCGAGCTCACGTAATCCGCTGCCTGTACCGGACGATCTCCTCCGTCGATTCCCAGGCCGACGAGGTGCA GCGGAGGATCCAGCTGCAGGATACTGTGGACGCGATCAGGAAGGAGGAGAAAGAGAAGCTGAGAGTCAACGAGGAGCTGATGAGGCTGCTTCTGAAGCTG GATTCCGTTCCGGGGGGAGTGGATCCGGCGGTTAGGGAAGCGAGGAGGAAGGTGAGCCGTAGGATCGTCGGTATGCAGGAGATACTCGACGGGATCTGCG AAGCTAAGGTTGATGACTGGGATTTAGATTTCGACTGCGGTGGAGGAGTTGGCGGGTTTAATTGGGATCGGACAGTGGCGGAGATGGAGGCGGAGATTTG TAAAGAGAGAGGCGGCGATGAGATGGAGCGGTTCTGTGCTCAGTATCTCGGCTTCCGTTGCTTCCAGCGCTTTCTTCGGGAGCCTTGA
AA sequence Show only first row Show all	>Lus10003798 pacid=23145972 polypeptide=Lus10003798 locus=Lus10003798.g ID=Lus10003798.BGIv1.0 annot-version=v1.0 MASFIDVRPDSHFPIQNLPYGVFKHKPSCLPRPAVAIGDYVLDLSEIALAGLFDGPILGSSDCFLQPNLNKFLSLGRPAWKEARATLQKLLSSELVCYHD MMNFCSLSTAASEPKLRDDASLREKALLPMSEVEMLLPVVIGDYSDFFSSMHHAKNCGTMFRGPQNPINLNWFHLPIAYHGRASSIVISGTDIIRPRGQG PPSGSSTPCFGPSQKLDFELEMAAIVGPGNELGKPIDVNEAADHIFGLVLMNDWSARDIQAWEYVPLGPFLGKSFSTTISPWIVTLDALAPFTCDAPKQD PPPLPYLAEKISKNYDISLEVQVKPSGLQESSVVTRTNFNHLYWTVTQQLAHHTVNGCNLRPGDLLGTGTISGPEPESYGCLLELTWNGQNPLSLNGATR KFLEDGDEVTITGFCKVCNSSPLDSRHLHSSSLLSDSNHSIFLCRETVTMSDSETVLGKSSLQTSLRSQLLVSATVTMRGFEEYNHFSTTVTYAFHDDVL PATPITTKEIPIQSSTPPATATDIPVTLHLPEHQTAATKIQSAYRAHVIRCLYRTISSVDSQADEVQRRIQLQDTVDAIRKEEKEKLRVNEELMRLLLKL DSVPGGVDPAVREARRKVSRRIVGMQEILDGICEAKVDDWDLDFDCGGGVGGFNWDRTVAEMEAEICKERGGDEMERFCAQYLGFRCFQRFLREP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G12050			fumarylacetoacetase, putative ...		Lus10003798 [exp]	0	1
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	4.1	0.8444
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10024922 [exp]	5.2	0.8428
AT3G19330			Protein of unknown function (D...		Lus10031977 [exp]	7.3	0.8266
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10009747 [exp]	11.2	0.8363
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10019252 [exp]	12.6	0.8430
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	12.8	0.8395
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10013848 [exp]	16.3	0.8313
AT5G64090			unknown protein		Lus10015829 [exp]	16.5	0.8285
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10025726 [exp]	17.0	0.8234
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10022023 [exp]	17.3	0.8198

Compare expression of checked genes

Lus10003798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.