Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06150 314 / 6e-103 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT3G11520 300 / 3e-98 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1) AT4G37490 293 / 3e-95 CYC1, CYCB1;1, CYCB1 CYCLIN 1, CYCLIN B1;1 (.1) AT2G26760 271 / 6e-87 CYCB1;4, CYC3 Cyclin B1;4 (.1) AT1G76310 235 / 1e-72 CYCB2;4 CYCLIN B2;4 (.1) AT1G20610 231 / 2e-71 CYCB2;3 Cyclin B2;3 (.1) AT4G35620 222 / 1e-67 CYCB2;2 Cyclin B2;2 (.1) AT2G17620 216 / 3e-65 CYCB2;1 Cyclin B2;1 (.1) AT1G16330 213 / 3e-62 CYCB3;1 cyclin b3;1 (.1) AT1G34460 189 / 2e-54 CYCB1;5, CYC3, CYCB1;4 CYCLIN 3, CYCLIN B1;5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010483 [exp] 449 / 1e-156 AT5G06150 322 / 8e-107 cyclin B 1;2, Cyclin family protein (.1) Lus10039033 [exp] 371 / 6e-125 AT5G06150 436 / 1e-150 cyclin B 1;2, Cyclin family protein (.1) Lus10036080 [exp] 299 / 2e-97 AT2G26760 405 / 2e-140 Cyclin B1;4 (.1) Lus10026803 [exp] 294 / 2e-95 AT2G26760 401 / 2e-138 Cyclin B1;4 (.1) Lus10027331 [exp] 216 / 2e-66 AT5G06150 262 / 2e-84 cyclin B 1;2, Cyclin family protein (.1) Lus10012261 [exp] 219 / 5e-66 AT1G76310 501 / 8e-176 CYCLIN B2;4 (.1) Lus10030746 [exp] 212 / 5e-64 AT1G76310 526 / 0.0 CYCLIN B2;4 (.1) Lus10013226 [exp] 211 / 1e-63 AT1G76310 514 / 0.0 CYCLIN B2;4 (.1) Lus10016015 [exp] 210 / 4e-63 AT1G76310 559 / 0.0 CYCLIN B2;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G033000 [exp] 325 / 2e-107 AT5G06150 452 / 5e-157 cyclin B 1;2, Cyclin family protein (.1) Potri.006G035200 [exp] 324 / 7e-107 AT5G06150 408 / 7e-140 cyclin B 1;2, Cyclin family protein (.1) Potri.001G272000 [exp] 289 / 9e-94 AT2G26760 434 / 1e-151 Cyclin B1;4 (.1) Potri.009G066600 [exp] 286 / 2e-92 AT2G26760 430 / 5e-150 Cyclin B1;4 (.1) Potri.005G251400 [exp] 225 / 1e-68 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.002G010000 [exp] 224 / 3e-68 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1) Potri.005G100000 [exp] 223 / 4e-68 AT2G17620 459 / 1e-160 Cyclin B2;1 (.1) Potri.009G165800 [exp] 215 / 3e-65 AT1G76310 488 / 2e-172 CYCLIN B2;4 (.1) Potri.010G173200 [exp] 202 / 4e-58 AT1G16330 477 / 1e-160 cyclin b3;1 (.1) Potri.008G083200 [exp] 182 / 7e-51 AT1G16330 497 / 1e-168 cyclin b3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003800 pacid=23145951 polypeptide=Lus10003800 locus=Lus10003800.g ID=Lus10003800.BGIv1.0 annot-version=v1.0 ATGGCCTACAAACCCATCGTTCCGCAGCAAGTTAGAGACGGTTTGAACAAGAATCCGCCGGAGCAGCAGAAGAAGAAGCCAATGGCAGAGAACAAGAACC GCAGAGCTCTCGGAGATATCGGCAATCTGGCCGCTGATGTCGTCCCTGAAATCGCCGGTAAGAAGATCACTCGTCCGGTCACCAGGAGCTTTCGAGCTCA ACTCCTAGCCAACGCCCAAACAGCCGCCGACAAGAAGCAAATCTGCGTCAAAGTCACCAGGGCACCCGCCGTCGTTAAGAACGCTCCGCCGAAGAAACCC TCCGCCGCCGCCGCCATAGTCAAGCCGAAGCCAAAGCCGGCGGTTAATCAGGCGGAGGTGATCAATATTGAGTCTGAAACAGAAGAAGAAGCCACCAAGG ATAACAGCGGCAAGAAGAAGATCCGAGAAGAATCAAAGAAGAAGAAGAAAGTTCAAACTTTCACTTCAATCCTCGCTACAGGAAGCAAGTTGGCTTGCGG TTCGGCCAAGAACAAGCCAAACCAACCGGAACCAGTATTCGACATCGACGCATCCGACGCCGGTAACCATTTGGCCGTCACCGAGTACGTCGACGACATC TACACTTTCTACAAGGAAGCCGAGAACGAGTGCCGACCGATCTTCTACATGGAGAGCCAGCAGGAGATCACAACCAAGATGCGATCAATCCTCGTCGACT GGCTAATCGACGTCCACCAGAAATTCGAGCTCGCCTACGAAACCCTCTACCTAACAATCAACATCGTCGACCGATTCCTCTCAGCAAAACCCGTCCCCCG CCGGGAGCTGCAGCTCGTCGGAATCGCCGCCACACTGACGGCTTCCAAATACGAGGAGATCTGGCCACCGGAGGTGAACGATCTGGTGGTAATCTCCGAC AGGGCCTACACCAACACCCAGATCCTGACCATGGAAAAGACAATCTTGGCCCACCTGGAGTGGACTCTGACGGTTCCGACCCAGTTCGTGTTCCTGAACC GGTTCGTGAAGGCGGCGGGCGACAGAGAGTCGCTGGGACACATGGCTGCGTTCTTCTCGGAGCTGGGGCTGATGGATTACGAGTGCTCGGTGGGGTTTAA GCCGTCAGTGGTGGCTGCGGCGGCGGTGTACGCGGCGAGGTGGGTGATGAAGCGGGTACCCGTTTGGAGCCCGGTGCTGGAGTTCTACAGTGGGTATAGG GAGGAGGAGGTTGTGGTTTGCGGAAAGATTCTGATTGGGTTGAAGGAGAAGGCTGGTGAAGGGAATCTGAATCTGAAGACTGTTGTGAGGAAGTATTCGA GTCCGTTGAAGGGGTCGGTGGCTCTGATTCCGTCGCCGCCGCTGAAGAATTGA
AA sequence Show only first row Show all	>Lus10003800 pacid=23145951 polypeptide=Lus10003800 locus=Lus10003800.g ID=Lus10003800.BGIv1.0 annot-version=v1.0 MAYKPIVPQQVRDGLNKNPPEQQKKKPMAENKNRRALGDIGNLAADVVPEIAGKKITRPVTRSFRAQLLANAQTAADKKQICVKVTRAPAVVKNAPPKKP SAAAAIVKPKPKPAVNQAEVINIESETEEEATKDNSGKKKIREESKKKKKVQTFTSILATGSKLACGSAKNKPNQPEPVFDIDASDAGNHLAVTEYVDDI YTFYKEAENECRPIFYMESQQEITTKMRSILVDWLIDVHQKFELAYETLYLTINIVDRFLSAKPVPRRELQLVGIAATLTASKYEEIWPPEVNDLVVISD RAYTNTQILTMEKTILAHLEWTLTVPTQFVFLNRFVKAAGDRESLGHMAAFFSELGLMDYECSVGFKPSVVAAAAVYAARWVMKRVPVWSPVLEFYSGYR EEEVVVCGKILIGLKEKAGEGNLNLKTVVRKYSSPLKGSVALIPSPPLKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10003800 [exp]	0	1
					Lus10037590 [exp]	1.0	0.9831
AT5G66230			Chalcone-flavanone isomerase f...		Lus10025961 [exp]	1.4	0.9760
AT4G14330			P-loop containing nucleoside t...		Lus10011804 [exp]	2.8	0.9703
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10037593 [exp]	3.0	0.9741
AT5G26910			unknown protein		Lus10037725 [exp]	3.0	0.9695
AT5G02370			ATP binding microtubule motor ...		Lus10024395 [exp]	3.7	0.9720
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10038729 [exp]	4.0	0.9740
AT1G70340			Plant protein of unknown funct...		Lus10029158 [exp]	5.7	0.9640
AT5G27550			P-loop containing nucleoside t...		Lus10004487 [exp]	5.9	0.9738
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10015684 [exp]	7.3	0.9734

Compare expression of checked genes

Lus10003800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.