Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22142 92 / 2e-20 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G15160 84 / 3e-19 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT3G22120 84 / 3e-18 CWLP cell wall-plasma membrane linker protein (.1) AT1G62500 79 / 7e-17 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G10940 74 / 7e-15 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT4G12470 60 / 7e-11 AZI1 azelaic acid induced 1 (.1) AT4G12480 57 / 7e-10 PEARLI 1 1, PEARLI 1, pEARLI1 EARLY ARABIDOPSIS ALUMINUM INDUCED 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12500 57 / 1e-09 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12490 56 / 3e-09 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G45180 51 / 5e-08 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010479 [exp] 112 / 2e-29 AT3G22142 168 / 3e-47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10010482 [exp] 107 / 4e-29 AT3G22142 162 / 5e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10003802 [exp] 81 / 2e-17 ND 127 / 5e-33 Lus10010480 [exp] 78 / 4e-17 ND 127 / 3e-34 Lus10032262 [exp] 79 / 6e-17 AT1G62500 162 / 3e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10028930 [exp] 76 / 5e-16 AT1G62500 141 / 4e-41 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10004349 [exp] 69 / 2e-13 AT1G62500 134 / 5e-38 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10027704 [exp] 65 / 2e-12 AT2G10940 135 / 2e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10001493 [exp] 59 / 7e-11 AT1G62510 111 / 2e-32 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G008300 [exp] 97 / 6e-24 AT3G22142 113 / 2e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G008500 [exp] 95 / 1e-23 AT3G22120 80 / 6e-18 cell wall-plasma membrane linker protein (.1) Potri.016G015500 [exp] 90 / 4e-20 AT3G22142 161 / 1e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G065500 [exp] 74 / 9e-16 AT2G10940 147 / 8e-44 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.003G111300 [exp] 74 / 3e-15 AT1G62500 125 / 2e-34 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.018G126000 [exp] 72 / 2e-14 AT2G10940 109 / 2e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.018G025900 [exp] 56 / 1e-09 AT2G45180 127 / 8e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.008G135860 [exp] 56 / 4e-09 AT1G62500 75 / 7e-16 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G121900 [exp] 52 / 4e-08 AT1G62510 99 / 5e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G158400 [exp] 51 / 5e-08 AT1G62510 132 / 1e-40 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003801 pacid=23145959 polypeptide=Lus10003801 locus=Lus10003801.g ID=Lus10003801.BGIv1.0 annot-version=v1.0 ATGGCCAAGCAATACTACTCTCTAGCTAGCTTCTTGCTATTCTTGGTTCTCAACTTGGGAGCCTTGATTGTTCCTTCTCTTGCTTGCCCTTCATGCACTC TTCCTCCTCCTCCTTGCCCACCAACTAAGCCACCACATATCAAGCCAACACCACCCACCGTGAAGCCAACACCGCCTGTGACGCCACCTGTGAAGCCGAC ACCACCAACTGTCAAGCCAACGCCACCTGTGAAGCCGACACCACCAACTGTCAAGCCAACGCCACCTGTGAAGCCGACACCACCAACTGTCAAGCCAACG CCACCTGTGAAGCCGACACCACCAACTGTCAAGCCAACGCCACCTACTGTCAAACCAACACCACCCGTGAAGCCAACACCACCTACTGTCAAACCAACGC CACCCGTGAAGCCAACACCACCTACTGTCAAGCCAACACCGCCCGTGAAGCCAACACCCCCAACTGTCAAGCCAACGCCACCCACTGTCAAGCCAACCCC ACCCGTTGAACCAACCCCACCAACTGTCAAGCCAACACCACCCACAGTCAAGCCGACGCCACCAGCCACCCCACCAGCACCATGCCCGCCACCAACTCCA TCTCCGATGCCACCGTCCCCACCTAAGAAAGACATGTGCCCCATCGACGCGCTCAAGCTAGGCGCGTGTGTGGACGTGTTGGGTGGGCTCGTCCACATTG GAATCGGACAGAGTGCCAAGTCGACTTGCTGCCCTCTTGTCCAAGGGCTAGCTGATTTGGATGCTGCCTTGTGCCTTTGCACCACCATCAAGCTGAAGCT TCTCAACGTCAACCTTATCCTCCCCATTGCTCTCGAAGTCCTCCTTGACTGTGGGAAGAACCCTCCTGCTGGTTTCAAGTGTCCTTCCTAG
AA sequence Show only first row Show all	>Lus10003801 pacid=23145959 polypeptide=Lus10003801 locus=Lus10003801.g ID=Lus10003801.BGIv1.0 annot-version=v1.0 MAKQYYSLASFLLFLVLNLGALIVPSLACPSCTLPPPPCPPTKPPHIKPTPPTVKPTPPVTPPVKPTPPTVKPTPPVKPTPPTVKPTPPVKPTPPTVKPT PPVKPTPPTVKPTPPTVKPTPPVKPTPPTVKPTPPVKPTPPTVKPTPPVKPTPPTVKPTPPTVKPTPPVEPTPPTVKPTPPTVKPTPPATPPAPCPPPTP SPMPPSPPKKDMCPIDALKLGACVDVLGGLVHIGIGQSAKSTCCPLVQGLADLDAALCLCTTIKLKLLNVNLILPIALEVLLDCGKNPPAGFKCPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10003801 [exp]	0	1
AT4G40042			Microsomal signal peptidase 12...		Lus10006422 [exp]	3.0	0.8578
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	3.5	0.8679
AT2G30620			winged-helix DNA-binding trans...		Lus10006561 [exp]	8.4	0.8336
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009580 [exp]	13.4	0.8500
					Lus10010480 [exp]	17.3	0.8632
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028225 [exp]	19.3	0.8313
AT5G66580			unknown protein		Lus10000739 [exp]	19.9	0.7614
AT1G27435			unknown protein		Lus10041533 [exp]	20.2	0.7638
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10017858 [exp]	20.6	0.7997
AT2G30620			winged-helix DNA-binding trans...		Lus10005535 [exp]	21.4	0.8117

Compare expression of checked genes

Lus10003801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.