Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22142 67 / 3e-12 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G15160 64 / 1e-11 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT1G62500 62 / 5e-11 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G22120 61 / 1e-10 CWLP cell wall-plasma membrane linker protein (.1) AT2G10940 61 / 1e-10 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT1G62510 49 / 5e-07 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT4G12500 46 / 6e-06 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G12090 44 / 1e-05 ELP extensin-like protein (.1) AT4G12470 42 / 0.0001 AZI1 azelaic acid induced 1 (.1) AT5G46890 39 / 0.0005 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003801 [exp] 151 / 4e-44 AT3G22142 168 / 7e-47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10010480 [exp] 125 / 2e-35 ND 127 / 3e-34 Lus10010479 [exp] 125 / 1e-34 AT3G22142 168 / 3e-47 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10010482 [exp] 115 / 1e-32 AT3G22142 162 / 5e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032262 [exp] 68 / 5e-13 AT1G62500 162 / 3e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10032257 [exp] 62 / 9e-12 AT4G12490 157 / 1e-49 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10024622 [exp] 61 / 7e-11 ND 130 / 1e-38 Lus10006191 [exp] 58 / 2e-10 AT1G62510 103 / 5e-29 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10004349 [exp] 58 / 7e-10 AT1G62500 134 / 5e-38 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G008300 [exp] 91 / 8e-22 AT3G22142 113 / 2e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G008500 [exp] 89 / 1e-21 AT3G22120 80 / 6e-18 cell wall-plasma membrane linker protein (.1) Potri.016G015500 [exp] 86 / 1e-18 AT3G22142 161 / 1e-42 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G065500 [exp] 52 / 4e-08 AT2G10940 147 / 8e-44 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.003G111300 [exp] 52 / 1e-07 AT1G62500 125 / 2e-34 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G158400 [exp] 47 / 1e-06 AT1G62510 132 / 1e-40 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.018G025900 [exp] 45 / 5e-06 AT2G45180 127 / 8e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.003G111400 [exp] 45 / 5e-06 AT1G62510 93 / 7e-25 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.018G126000 [exp] 47 / 8e-06 AT2G10940 109 / 2e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Potri.001G121900 [exp] 44 / 1e-05 AT1G62510 99 / 5e-27 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003802 pacid=23145948 polypeptide=Lus10003802 locus=Lus10003802.g ID=Lus10003802.BGIv1.0 annot-version=v1.0 ATGGGGAGGATAAGGTTGACGTTGAGAAGCTTCAGCTTGATGGTGGTGCAAAGGCACAAGGCAGCATCCAAATCAGCTAGCCCTTGGACAAGAGGGCAGC AAGTCGACTTGGCACTCTGTCCGATTCCAATGTGGACGAGCCCACCCAACACGTCCACACACGCGCCTAGCTTGAGCGCGTCGATGGGGCACATGTCTTT CTTAGGTGGGGACGGTGGCATCGGAGATGGAGTTGGTGGCGGGCATGGTGCTGGTGGGGTGGCTGGTGGCGTCGGCTTGACTGTGGGTGGTGTTGGCTTG ACAGTTGGTGGGGTTGGTTCAACGGGTGGGGTTGGCTTGACAGTGGGTGGCGTTGGCTTGACAGTTGGGGGTGTTGGCTTCACGGGCGGTGTTGGCTTGA CAGTAGGTGGTGTTGGCTTCACGGGTGGCGTTGGTTTGACAGTAGGTGGTGTTGGCTTCACGGGTGGTGTTGGTTTGACAGTAGGTGGCGTTGGCTTGAC AGTTGGTGGTGTCGGCTTCACAGGTGGCGTTGGCTTGACAGTTGGTGGTGTCGGCTTCACAGGTGGCGTTGGCTTGACAGTTGGTGGTGTCGGCTTCACA GGTGGCGTTGGCTTGACAGTTGGTGGTGTCGGCTTCACAGGTGGCGTCACAGGCGGTGTTGGCTTCACGGTGGGTGGTGTTGGCTTGATATGTGGTGGCT TAGTTGGTGGGCAAGGAGGAGGAGGAAGAGTGCATGAAGGGCAAGCAAGAGAAGGAACAATCAAGGCTCCCAAGTTGAGAACCAAGAATAGCAAGAAGCT AGCTAGAGAGTAG
AA sequence Show only first row Show all	>Lus10003802 pacid=23145948 polypeptide=Lus10003802 locus=Lus10003802.g ID=Lus10003802.BGIv1.0 annot-version=v1.0 MGRIRLTLRSFSLMVVQRHKAASKSASPWTRGQQVDLALCPIPMWTSPPNTSTHAPSLSASMGHMSFLGGDGGIGDGVGGGHGAGGVAGGVGLTVGGVGL TVGGVGSTGGVGLTVGGVGLTVGGVGFTGGVGLTVGGVGFTGGVGLTVGGVGFTGGVGLTVGGVGLTVGGVGFTGGVGLTVGGVGFTGGVGLTVGGVGFT GGVGLTVGGVGFTGGVTGGVGFTVGGVGLICGGLVGGQGGGGRVHEGQAREGTIKAPKLRTKNSKKLARE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003802 [exp]	0	1
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010479 [exp]	1.4	0.9752
AT3G08030			Protein of unknown function, D...		Lus10016394 [exp]	1.7	0.9701
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	2.0	0.9762
					Lus10026740 [exp]	5.7	0.9678
AT5G11420			Protein of unknown function, D...		Lus10019724 [exp]	8.1	0.9666
AT5G11420			Protein of unknown function, D...		Lus10005474 [exp]	8.7	0.9483
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10017436 [exp]	9.2	0.9119
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Lus10018926 [exp]	9.4	0.9634
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	9.5	0.9594
AT5G25940			early nodulin-related (.1)		Lus10030052 [exp]	11.0	0.9653

Compare expression of checked genes

Lus10003802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.