Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20650 561 / 0 mRNA capping enzyme family protein (.1.2) AT1G79480 135 / 2e-34 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT5G67460 127 / 8e-32 O-Glycosyl hydrolases family 17 protein (.1) AT1G18650 108 / 7e-27 PDCB3 plasmodesmata callose-binding protein 3 (.1) AT2G30933 103 / 5e-25 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT2G04910 99 / 2e-24 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT4G13600 101 / 4e-24 Carbohydrate-binding X8 domain superfamily protein (.1) AT3G13560 103 / 4e-23 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT5G24318 102 / 6e-23 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G55180 100 / 2e-22 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010478 [exp] 921 / 0 AT3G20650 570 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10039035 [exp] 568 / 0 AT3G20650 485 / 2e-172 mRNA capping enzyme family protein (.1.2) Lus10027333 [exp] 548 / 0 AT3G20650 482 / 4e-169 mRNA capping enzyme family protein (.1.2) Lus10000278 [exp] 131 / 4e-33 AT1G79480 164 / 7e-47 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10001764 [exp] 130 / 8e-33 AT1G79480 165 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1.2) Lus10002466 [exp] 115 / 3e-29 AT5G67460 175 / 1e-53 O-Glycosyl hydrolases family 17 protein (.1) Lus10015259 [exp] 112 / 1e-27 AT1G29380 143 / 4e-41 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10040522 [exp] 108 / 1e-26 AT1G18650 158 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10021157 [exp] 107 / 3e-26 AT1G18650 157 / 7e-49 plasmodesmata callose-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130100 [exp] 601 / 0 AT3G20650 582 / 0.0 mRNA capping enzyme family protein (.1.2) Potri.006G008200 [exp] 146 / 2e-39 AT1G79480 142 / 8e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.008G082900 [exp] 145 / 8e-38 AT1G79480 159 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.010G173500 [exp] 137 / 2e-35 AT1G79480 162 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.019G012000 [exp] 109 / 1e-27 AT4G05430 155 / 3e-49 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.013G003500 [exp] 117 / 3e-27 AT1G09460 144 / 3e-38 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.005G003500 [exp] 113 / 6e-26 AT2G30933 142 / 1e-38 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.019G007800 [exp] 105 / 6e-26 AT4G05430 160 / 4e-51 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.017G055700 [exp] 105 / 1e-25 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.004G153800 [exp] 110 / 2e-25 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03291 [flax] [poplar] Pox_MCEL mRNA capping enzyme CL0063 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10003803 pacid=23145970 polypeptide=Lus10003803 locus=Lus10003803.g ID=Lus10003803.BGIv1.0 annot-version=v1.0 ATGAAACGTGGGTACACAGATTCTCCATCAAACTCTGCTGCACCTCCGAAATCCCGGCTCAAATACTCAACCGAAGGTGGCCTTGCTGTTTCCTGTGATG CTCAGTTCTCAGAGGATGTTGTTCAGAAAGTGGCTGACCATTACAGTGCAAGAACGAACCAGACTCTGGAAGAGCGAGAAGCGAGTCCGATTATCCATTT GAAGAAACTCAACAACTGGATAAAGAGTGTCTTGATTCAACTGTATGCTCGTAGAGGGGATGCTGTTCTTGATCTTGCTTGTGGAAAGGGTGGTGATCTC ATCAAGTGGGATAAAGCAAAAGCAGGATACTATGTTGGTGTCGACATCGCTGAAGGCTCGATAGAAGATTGCCGGACACGTTATAATGGGGATGCTAATC ATCATCAAAACCGTAAAAAGTTCTCATTTCCCGCTCGTCTTATATGTGGAGATTGCTTTGAGATTCGTTTGGACAAGGTGCTCGCTGATGACGCTCCTTT TGATCTCTGCAGTTGTCAGTTTGCAATGCATTATTCGTTTTCTACAGAGACACGTGCTCGGAGGGCACTGGCCAATGTGTCTGCTCTACTACGTCCTGGG GGTACAATGATTGGAACAATGCCAGATGCTAATGTTATCATCAAGAAACTCAGAGAATCTGATGGACTGGCTTTTGGTAATAGTGTGTACTCTATCCGTT TTGATGATGACTATTCAGAGAAGGCGAGTTATTCTTATTCTAAATTTAACTCATCCTCTCCTTTCGGTATCAAGTACCAGTTCCACCTAGAGGATGCCGT TGATTGCCCTGAATGGATTGTCCCCTTTGATGTATTCAAATCCTTGGCAGAAGAGTATGATTTGGAACTGGTTTTCGTAAAGAACGAACATGAATTCGTG CACGAGTATTTAAAGAAGCCAGAATATGTCGAGCTAATGCGAAGGCTTGGTGCTTTGGGGGATAGTCAGGATCGGAGTGCCCTAACTCCAGATGAATGGG AAGTATCATACTTATACCTTGCATTCGTTTTGAGAAAGCGAGGCCAACCGGACCGCTCGCAAGTAAACAGACGACGAGATAAAGGGAAAATGCAGATATC GAAAGATGACATCATCAAAAAAATGAAGCCACGAAGTTCAGTTGTCTCTTTTAAAGAGCTCAGCTTCAGCATTGTGTTGATTCTTCTTCAATTTTTTGTC TTCAATGCAACAGCCGATGCGAGATCATTGAGGGTTTTCAAACATGGAGGCTACGAACAGCCTGATGAGATGCTACCTAGTGAGTTAGAGGAGACGATAT TTGAACCCGATGTAACTGAGACTCCCATGGGATCGTTCTCGCAAGTCCCGGTGGCACAACAATTACCTCCTCTCTCGTCTCCTGCTCCGATCTGTGCGTA TCCTCCATCTGCCCTACCTTCTCCCGCAACCAATCCCTGCTCACCACCACAAGTAGCCTCGACCATACCTTCTCCCACAAGCTATCCTTCTTCACCACCG CCACCTTCATCATCGACCATACCTTCTCCCACAAGCTATCCTTCTTCACCACCACCACCATGGTCATCTACCATACCTTCTCCCATAAGCAATCCTTCTT CACCACCAACACCATCTACCCTACCTTCTCCCACAAGCAAGCCACCTCCATATTTGCCAGCCCAAGGCCCACCGCCTACCCAATCAAGCCCACCTCCCCT CCAACGAAGCCCACCAACGAGCATCCCAATCCCACCGGCCCACAACCCTACCGTCCCCGTGATGCCTTACACCCCACCGGCCACGGGGAAAAAGCCTGGA ACCGGCTCGTGGTGTGTGTCAAAACCTACCGTGTCCGATGCGATACTCCAACGGGGCTTGGACTACGCTTGCGGGATGGGTGCGGATTGCAAGCAGATTC AGGCTGGCGGGCCTTGCTTCCAGCCCAATACAGTATCAGCCCACTCTTCCTTTGCCTTCAACAGTTACTGGCAGAAGGGGAAAGCTGCAGGAGGCACTTG TGATTTTGGCGGGACTGCCATGATAGTCACCATTGATCCAAGTTACGATGGTTGTCGTTTCACGGCCAACTAG
AA sequence Show only first row Show all	>Lus10003803 pacid=23145970 polypeptide=Lus10003803 locus=Lus10003803.g ID=Lus10003803.BGIv1.0 annot-version=v1.0 MKRGYTDSPSNSAAPPKSRLKYSTEGGLAVSCDAQFSEDVVQKVADHYSARTNQTLEEREASPIIHLKKLNNWIKSVLIQLYARRGDAVLDLACGKGGDL IKWDKAKAGYYVGVDIAEGSIEDCRTRYNGDANHHQNRKKFSFPARLICGDCFEIRLDKVLADDAPFDLCSCQFAMHYSFSTETRARRALANVSALLRPG GTMIGTMPDANVIIKKLRESDGLAFGNSVYSIRFDDDYSEKASYSYSKFNSSSPFGIKYQFHLEDAVDCPEWIVPFDVFKSLAEEYDLELVFVKNEHEFV HEYLKKPEYVELMRRLGALGDSQDRSALTPDEWEVSYLYLAFVLRKRGQPDRSQVNRRRDKGKMQISKDDIIKKMKPRSSVVSFKELSFSIVLILLQFFV FNATADARSLRVFKHGGYEQPDEMLPSELEETIFEPDVTETPMGSFSQVPVAQQLPPLSSPAPICAYPPSALPSPATNPCSPPQVASTIPSPTSYPSSPP PPSSSTIPSPTSYPSSPPPPWSSTIPSPISNPSSPPTPSTLPSPTSKPPPYLPAQGPPPTQSSPPPLQRSPPTSIPIPPAHNPTVPVMPYTPPATGKKPG TGSWCVSKPTVSDAILQRGLDYACGMGADCKQIQAGGPCFQPNTVSAHSSFAFNSYWQKGKAAGGTCDFGGTAMIVTIDPSYDGCRFTAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20650			mRNA capping enzyme family pro...		Lus10003803 [exp]	0	1
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	1.7	0.9592
AT3G20650			mRNA capping enzyme family pro...		Lus10010478 [exp]	1.7	0.9558
AT4G01410			Late embryogenesis abundant (L...		Lus10030193 [exp]	2.0	0.9549
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10016710 [exp]	2.2	0.9537
AT4G18340			Glycosyl hydrolase superfamily...		Lus10028122 [exp]	2.4	0.9588
AT3G26350			unknown protein		Lus10006464 [exp]	2.4	0.9527
AT1G23530			unknown protein		Lus10013015 [exp]	4.1	0.9246
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10022141 [exp]	4.2	0.9383
AT2G46630			unknown protein		Lus10030217 [exp]	5.7	0.9492
AT3G19320			Leucine-rich repeat (LRR) fami...		Lus10002828 [exp]	8.9	0.9275

Compare expression of checked genes

Lus10003803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.