Plant FIBer expression Database

Lus10003804 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G15140 72 / 6e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010477
[exp]
249 / 1e-85 AT4G15140 73 / 1e-16 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G008000
[exp]
89 / 2e-22 AT4G15140 86 / 3e-21 unknown protein
Potri.004G061100
[exp]
39 / 0.0004 ND /
Potri.011G108700
[exp]
38 / 0.0005 AT4G15140 42 / 9e-06 unknown protein
PFAM info
Representative CDS sequence
>Lus10003804 pacid=23145960 polypeptide=Lus10003804 locus=Lus10003804.g ID=Lus10003804.BGIv1.0 annot-version=v1.0
ATGCTGAACAACACTAAGAAGACAAAACACTTCGGATTAGAACAACAAGAAGAAGAAAGTCGTCTTCTTCCTCTTCAGAGCCCGAGCTGCAAAGTGGTGG
AGTATGCACAGCCAGTGATGTCGAAGGAGCTGCTGGTGAAGTTCCCTGACAACTCAGCCTTCGACTTCAACTACTCCGAGAGCTCCATCTGGTCGCCTCT
CGTGCCCCGAATCCACAATTTCGGAGGCGGGTTCTTGCCCAATTTGGATCTCGATGAAGACAGGTCCGGTGGGTTGAGGAAGAAGAGGAGAAAGAAGATG
ACGATGGCGGCGGAGGAGAAGGACGGAGATAGTGTTTCCTGTAGGTTTAATTTCGGCGGAGGTTCGAAGGCGGAGGAGGAGAAGGAGAATCGGGTCGAGG
GTAGTACGAGTACTGCTTCGTGTGTACCACTAGCTTCCAAGGGTTGGAATAAGGTGATGAAAGCTGCAACGAAGCATTTCAAGAAGAAGAAGATGATCAA
GAGGAGAGGTTCTCATGTTAAGCTGTGTAATTATTTGGCTAAATTGCCTTAA
AA sequence
>Lus10003804 pacid=23145960 polypeptide=Lus10003804 locus=Lus10003804.g ID=Lus10003804.BGIv1.0 annot-version=v1.0
MLNNTKKTKHFGLEQQEEESRLLPLQSPSCKVVEYAQPVMSKELLVKFPDNSAFDFNYSESSIWSPLVPRIHNFGGGFLPNLDLDEDRSGGLRKKRRKKM
TMAAEEKDGDSVSCRFNFGGGSKAEEEKENRVEGSTSTASCVPLASKGWNKVMKAATKHFKKKKMIKRRGSHVKLCNYLAKLP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G15140 unknown protein Lus10003804
[exp]
0 1
AT1G69770 CMT3 chromomethylase 3 (.1) Lus10017720
[exp]
6.9 0.9140
AT4G13690 unknown protein Lus10000756
[exp]
10.0 0.9073
AT5G11550 ARM repeat superfamily protein... Lus10011691
[exp]
17.9 0.8997
AT4G28950 ATRAC7, ARAC7, ... Arabidopsis RAC-like 7, RHO-re... Lus10023660
[exp]
18.7 0.8620
AT4G14310 Transducin/WD40 repeat-like su... Lus10011802
[exp]
20.0 0.9016
AT4G11080 3xHMG-box1 3xHigh Mobility Group-box1, HM... Lus10001909
[exp]
21.9 0.8883
AT5G47500 PME5 pectin methylesterase 5, Pecti... Lus10004720
[exp]
27.6 0.8771
AT4G38070 bHLH basic helix-loop-helix (bHLH) ... Lus10035943
[exp]
28.4 0.8916
AT2G22840 GRF ATGRF1 growth-regulating factor 1 (.1... Lus10011559
[exp]
28.5 0.8826
AT1G08880 HTA5 ,G-H2AX ,G... histone H2A 5, gamma histone v... Lus10028044
[exp]
28.8 0.8825

Lus10003804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.