Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07250 332 / 8e-109 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT4G15280 329 / 1e-107 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT1G07240 317 / 3e-103 UGT71C5 UDP-glucosyl transferase 71C5 (.1) AT3G21760 315 / 4e-102 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) AT2G29710 313 / 6e-102 UDP-Glycosyltransferase superfamily protein (.1) AT2G29730 312 / 3e-101 UGT71D1 UDP-glucosyl transferase 71D1 (.1) AT1G07260 309 / 3e-100 UGT71C3 UDP-glucosyl transferase 71C3 (.1) AT2G29740 309 / 6e-100 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT3G21750 306 / 6e-99 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT3G21780 305 / 2e-98 UGT71B6 UDP-glucosyl transferase 71B6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010476 [exp] 948 / 0 AT1G07250 342 / 7e-113 UDP-glucosyl transferase 71C4 (.1) Lus10039037 [exp] 355 / 8e-118 AT1G07250 378 / 8e-127 UDP-glucosyl transferase 71C4 (.1) Lus10026795 [exp] 338 / 3e-111 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036087 [exp] 336 / 1e-110 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10036086 [exp] 322 / 6e-105 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10036088 [exp] 316 / 3e-102 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10026793 [exp] 303 / 3e-97 AT3G21780 407 / 4e-138 UDP-glucosyl transferase 71B6 (.1) Lus10010475 [exp] 272 / 3e-89 AT1G07250 131 / 5e-36 UDP-glucosyl transferase 71C4 (.1) Lus10039301 [exp] 244 / 5e-75 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G015700 [exp] 394 / 3e-133 AT3G21760 354 / 6e-118 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G014500 [exp] 384 / 3e-129 AT1G07250 394 / 3e-133 UDP-glucosyl transferase 71C4 (.1) Potri.016G015800 [exp] 370 / 5e-124 AT1G07250 395 / 3e-134 UDP-glucosyl transferase 71C4 (.1) Potri.016G016000 [exp] 371 / 6e-124 AT3G21750 456 / 6e-158 UDP-glucosyl transferase 71B1 (.1) Potri.009G044600 [exp] 353 / 4e-117 AT2G29730 488 / 2e-170 UDP-glucosyl transferase 71D1 (.1) Potri.006G010000 [exp] 347 / 7e-115 AT1G07250 375 / 3e-126 UDP-glucosyl transferase 71C4 (.1) Potri.014G026301 [exp] 342 / 2e-112 AT1G07250 356 / 2e-118 UDP-glucosyl transferase 71C4 (.1) Potri.016G014401 [exp] 340 / 7e-112 AT3G21760 363 / 3e-121 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G014350 [exp] 339 / 9e-112 AT3G21760 367 / 7e-123 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Potri.016G016300 [exp] 339 / 1e-111 AT3G21790 425 / 4e-145 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10003805 pacid=23145963 polypeptide=Lus10003805 locus=Lus10003805.g ID=Lus10003805.BGIv1.0 annot-version=v1.0 ATGACTAAACCAGAGCTAGTAATGGTCCCAATTCCGGCGATCGGCCATCTCCCGCCGGTGGTCGAATTCTCCAAGCACATCACCGCTCGCAACAGTCAAC TCTCCGTCACAATCGTACTCATCCGAACTCCCTTCTCTCCGGAGGTCGACTCATTTTCCGATCGGCTAGCCGAATCCTGCAAAGACTGTAAAGCAATCAA TTTCATCAGAATCTCCGAACCCAAGTTCCCCCCGATCGATTCCTACAGTTCAGTACACTCTTTCTTCCCGAAATTTCTGGATTCCCAGACGGACGCTGTG AAACAGGCTCTGGCAGCTCGGTTCTCTGGCGATTCCTCTGTTTCACTGGCCGGGATTGTGGTGGATATCCTGACGACGGCGATGGTTGATTTGGGGAAGG AACTTGGTGTTCCTTCTTACCTTTTCTTCCCTTCTTGTGCAGCGATCCTGGGTCACTTAGTCCATTTGCCGGCGATGGGATACTCGCCGGAGGTAGCCGT CGGTGATCCCGATGGCGAGGTGGTTTACCCCAGCTTTGAGCATCCAATGCCTAATCGGATCCTGCCGGCGATTGTTCTCGACGGACAAGGCTACCAGGAG TTGATGGGTCACACGAGGAAGTACAATGAGGTCGATGGAATCGTTGTGAATTCGTATGTCGGGCTCGAGTCTCGAGCTATTAATATCTTGAACGGAAAAG TTGATGGAGTTTTCCGGATTGGAGGGAAGTCATTCCCTCCTGTTTTTCCAGTCGGACCGGTTCTCAATCTGAAAGGGCATGCCACGTTAGGAAACACCAA ATCGTTGAGCGAAAAAGCGATGACGTGGCTAGACGACCAACCTCCACAATCGGTCGTGTTCATGTGCTTCGGAAGTCTAGGAAGCTTCACCGACGCCCAA CTCGGGGAAGTCGCGGCCGGGCTAGAGCGAGCACGACATGTGCGATTTTTGTGGGTAATGCGCAAGATATCATCCGGAGATTCAAAATGGACGCCTAACG ATTGCGAAGACTACTCTCCCTCCTCGCCCGCTCTAAACGCCTTGGGCGAAGGATTTCTTGAGCGGACGAGAGGGAGAGTAATGGTGTGCGGGTGGCTCCC TCAGGCAGCTATACTAGCCCACAAGGCCATTGGAGGGTTCATGTCACACTGCGGTTGGAACTCTATACTTGAGAGCCTCTGGCACGGAGTGCCCATGTTA GCATGGCCGATGTATGCAGAGCAACAGATGAATGCATTCTACATGACAACAGAGTTAGGATTAGCGGTCGAGCTGAGGGCAGACTACCGAATATGGAAGA GCGATGAGGATGGAGAAATGGTGGTGAAGGGAGATGAGATTGCTAGGAAGATTGAGATGGTGATGGACAAGCATAGTGAGGTGAGAAAGAAGGTAAAGGA AATGAGTGAGCTTGGGAGGAGGGCTTTGAATGAAGGTGGATCGTCATTTGATGGCATTGATGGATTCATGGATTTGGTATTGAAGAACAAGCCAATGGTT TGA
AA sequence Show only first row Show all	>Lus10003805 pacid=23145963 polypeptide=Lus10003805 locus=Lus10003805.g ID=Lus10003805.BGIv1.0 annot-version=v1.0 MTKPELVMVPIPAIGHLPPVVEFSKHITARNSQLSVTIVLIRTPFSPEVDSFSDRLAESCKDCKAINFIRISEPKFPPIDSYSSVHSFFPKFLDSQTDAV KQALAARFSGDSSVSLAGIVVDILTTAMVDLGKELGVPSYLFFPSCAAILGHLVHLPAMGYSPEVAVGDPDGEVVYPSFEHPMPNRILPAIVLDGQGYQE LMGHTRKYNEVDGIVVNSYVGLESRAINILNGKVDGVFRIGGKSFPPVFPVGPVLNLKGHATLGNTKSLSEKAMTWLDDQPPQSVVFMCFGSLGSFTDAQ LGEVAAGLERARHVRFLWVMRKISSGDSKWTPNDCEDYSPSSPALNALGEGFLERTRGRVMVCGWLPQAAILAHKAIGGFMSHCGWNSILESLWHGVPML AWPMYAEQQMNAFYMTTELGLAVELRADYRIWKSDEDGEMVVKGDEIARKIEMVMDKHSEVRKKVKEMSELGRRALNEGGSSFDGIDGFMDLVLKNKPMV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10003805 [exp]	0	1
AT2G30140			UDP-Glycosyltransferase superf...		Lus10042261 [exp]	4.5	0.9561
AT5G65380			MATE efflux family protein (.1...		Lus10002645 [exp]	4.7	0.9505
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039505 [exp]	8.4	0.9328
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10005951 [exp]	9.2	0.9462
AT1G65820			microsomal glutathione s-trans...		Lus10007375 [exp]	9.5	0.9442
AT4G01870			tolB protein-related (.1)		Lus10038052 [exp]	9.8	0.9486
AT1G47530			MATE efflux family protein (.1...		Lus10042130 [exp]	11.2	0.9345
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10025706 [exp]	11.7	0.9436
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026178 [exp]	15.0	0.9396
AT5G06740			Concanavalin A-like lectin pro...		Lus10016257 [exp]	19.0	0.9254

Compare expression of checked genes

Lus10003805 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.