Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22150 947 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G63370 391 / 3e-122 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 374 / 5e-116 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 361 / 5e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 357 / 6e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27110 352 / 2e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G01580 350 / 2e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 347 / 2e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 350 / 2e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 344 / 9e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010473 [exp] 1566 / 0 AT3G22150 1007 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 402 / 1e-125 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016943 [exp] 397 / 1e-124 AT5G08490 924 / 0.0 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 397 / 6e-124 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 390 / 8e-122 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007806 [exp] 383 / 3e-119 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 380 / 4e-118 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002054 [exp] 361 / 8e-111 AT1G74600 930 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10008967 [exp] 360 / 1e-110 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G007800 [exp] 1068 / 0 AT3G22150 1088 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 400 / 4e-125 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 388 / 1e-120 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G258500 [exp] 385 / 4e-120 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G134300 [exp] 383 / 2e-119 AT5G08490 977 / 0.0 SLOW GROWTH 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 372 / 6e-116 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 370 / 3e-113 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 365 / 1e-112 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 365 / 1e-112 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G080200 [exp] 363 / 2e-112 AT1G11290 447 / 3e-145 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10003806 pacid=23145964 polypeptide=Lus10003806 locus=Lus10003806.g ID=Lus10003806.BGIv1.0 annot-version=v1.0 ATGGGCTTCGCTGCACTCCTCCGCTCGCCACTACCGTCATTTCCCTTCCTTCCTCGCACCACTTTCGCCGCCGTCCCGATTCCGGCCAGTACAACCATCT TCGTCGATCCTCCGTCGCCGGCCTTTGCTCTCGCAATGGCTTCGGCTTCTTCCTCCTTCGTTGCCCTTCCTGCCCCTATCTCCGTCCACTCTCGCCGCAG CTCCGATCTCGACGAGGGTAAATTCTCCATATTAACAGTCTCCACAACTCCGAAGCCAACTCTCAAGACACCCACAATCCGCTCTCGCCTCAGCAAGCTC TGTCAAGATGGTCAACTGCAACTTGCCCGCCAACTGTTCGACACAATTCCTCAACCGACGACTTCGGTATGGAACACGATCATTATCGGGTACATTTGCA ACGACATGCCGTATGAAGCCCTTCGTTTATACGGACATATGAAGAGAAGTGGGTTTCCTAATACCAAGTGTGATTCTTATACTTACTCTTCTACGTTGAA AGCCTGTGCCCAGACAGCGGATTTAAGGGCTGGTAAGGCCGTTCACTGCCATTTGATTCGCTGCGTTGAGTATCCGAGTAAGATTGTGTGTAATTCGCTG CTGAACATGTACTCCACTTGCTTAAGCCAACTGAATTCGTCTATTCGAGTTGAATTTTCCAAGTATGATGTTGTCCGCAAGGTGTTTGATACAATGCGTA AGAGAGATGTTGTGGCGTGGAACATTTTGGTTTCGTGGTATGTTAAGACGGATAGGTACGCTAGAGCTGTTAGGCAGTTTAGGAGGATGATGAAAATGGA GATTAAGCCGAGTCCGGTGAGCTTTGTCAGTGTTCTCCCTGCTGTATCGGCTATCCAGGACAGTGTAGCTGCGAATGTGCTGTATGGGATGCTTGTTAAG CTCGGTGGTGAGTATATCAACGACTTGTTTGTTGTGAGTTCCGCCATTATTATGTACTCAGAGCTTGGCTGTCTTGATTTGGCCAGGAAGGTCTTCGACT GCTGTTTGGTGAAGAACACTGAAGTGTGGAATAGCATGATTGGTGGGTATGTGCAGAACAATCGTCCGGTCCAAGCGGTCGATCTTTTCCTTCGTGCAAT CGAAAATAAACAGACCGATAGCATATCGTACCTTTCGGTCTTGACAGCTATTTCGCAGCTGCAGTGTTTAGATTCGGCTCGACAGCTGCACGCCTTTGTC GTCAAGAATCTCGGTCCAGTACCACCCGTGGCGATACAGAATGCAGTCATAGTCATGTATTCACGATGCAACGCTGTCGCAACTTCGTTCGATGTCTTCC AGAAGATGCCTGAACGTGACGTGGTGTCGTGGAACACGATGGTTTCTGCATTCGTGCAGAATGGTTTCGACGACGAAGGGTTAATTCTTGTGCACGAAAT GCAGAAGCAGAAGTTTGAAGTTGATGAGGTGACAGTCACCGCTCTGCTCTCTTTAGCATCTAATCTGAGAAACCTGCAGATTGGGAAACAAACCCATGGA TACATCCTCAGGCAAGGCGTAAAATTCGAAGGAATGGAGAGTTATCTAGTCGACATGTATGCAAAATGCGGCTCGAATTGGATCAGTACAGCTGAACACA TTTTCTGGACGAGCCTTTCGAGAAGTAGAGATCAAGCGACGTGGAACGGTATGATTTCCGGGTACACACAGAATGGGTTGGTTGAAGAAGCTTTTGCAAC ATTCAGGCAAATGCTTCAGCTACCAGTGGTGCCTAATGCTGTAACGTTAGCATCTATCCTTCCAGCTTGTACTCAAATGGGAAGCATCAATCTTGGGAAG CAACTCCACGCTGTCTCTGTCCGACATATGTTCGACCAAAATATCTTCCTAAGCTCAGCTTTAGTCGACATGTACTCTAAATCAGGCTCGATCAGCTATG CTGAATCCGTGTTCTTCGCCAGATGTCCCGACAGAAACTCGGTCACATACACGACGATGATCTTAGGCTACGGCCAGCATGGAATGGGCGACAAAGCCTT ATCTTTGTTCCACTCCATGCAAAGCTCAGGTGTGAAACCTGATGCAGTGACGATAGTAGCACTTCTTTCCGCCTGTAGCTACTCGGGATTGGTCGACGAA GGTCTTCAGGTATTTGAATCGATCGAGAAGGAGTTTGACATCGCGCCTACGGTTCAGCATTACTGTTGTGTAGCGGATATGCTGGGAAGAGTGGGCAGAG TGGTCGAGGCTTACGAAGTGGGCAGAGTGGTGGAGGCTTACGAATTTGTCGAACGATTGGGCGAAAGGGGCAATGTTGTGCAAATTTGGGGATCGGTTCT CGGGGCGTGTAGACTTCATGGATGTAACGAGATCGGAGAAGCTGTTTCGGAGAAGATACGAGCGCTAGGAGGTGGGGTGGAAGGCTATGAGGTGCTGCTC TCGAATATTTATGCTGGAGAAGGTGAGTGGAGAAGTGTTGATAAAGTGAGGACAGGGATGAGGGAAAAGGGTTTGCAGAAGCTTGTTGGTCGTAGCTGGA TTAATATCGGCGGTAATGTGACTCGTTTCGTGTCGAGAGATCAGGACCACGATCAATGTGATCGGATTTACGGAGCGCTGGAAGGTCTTTCCATGGAGAT GAAGCATTCTGATGTCTGA
AA sequence Show only first row Show all	>Lus10003806 pacid=23145964 polypeptide=Lus10003806 locus=Lus10003806.g ID=Lus10003806.BGIv1.0 annot-version=v1.0 MGFAALLRSPLPSFPFLPRTTFAAVPIPASTTIFVDPPSPAFALAMASASSSFVALPAPISVHSRRSSDLDEGKFSILTVSTTPKPTLKTPTIRSRLSKL CQDGQLQLARQLFDTIPQPTTSVWNTIIIGYICNDMPYEALRLYGHMKRSGFPNTKCDSYTYSSTLKACAQTADLRAGKAVHCHLIRCVEYPSKIVCNSL LNMYSTCLSQLNSSIRVEFSKYDVVRKVFDTMRKRDVVAWNILVSWYVKTDRYARAVRQFRRMMKMEIKPSPVSFVSVLPAVSAIQDSVAANVLYGMLVK LGGEYINDLFVVSSAIIMYSELGCLDLARKVFDCCLVKNTEVWNSMIGGYVQNNRPVQAVDLFLRAIENKQTDSISYLSVLTAISQLQCLDSARQLHAFV VKNLGPVPPVAIQNAVIVMYSRCNAVATSFDVFQKMPERDVVSWNTMVSAFVQNGFDDEGLILVHEMQKQKFEVDEVTVTALLSLASNLRNLQIGKQTHG YILRQGVKFEGMESYLVDMYAKCGSNWISTAEHIFWTSLSRSRDQATWNGMISGYTQNGLVEEAFATFRQMLQLPVVPNAVTLASILPACTQMGSINLGK QLHAVSVRHMFDQNIFLSSALVDMYSKSGSISYAESVFFARCPDRNSVTYTTMILGYGQHGMGDKALSLFHSMQSSGVKPDAVTIVALLSACSYSGLVDE GLQVFESIEKEFDIAPTVQHYCCVADMLGRVGRVVEAYEVGRVVEAYEFVERLGERGNVVQIWGSVLGACRLHGCNEIGEAVSEKIRALGGGVEGYEVLL SNIYAGEGEWRSVDKVRTGMREKGLQKLVGRSWINIGGNVTRFVSRDQDHDQCDRIYGALEGLSMEMKHSDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22150			Tetratricopeptide repeat (TPR)...		Lus10003806 [exp]	0	1
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10035831 [exp]	1.7	0.8453
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10004987 [exp]	3.9	0.8020
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10012974 [exp]	4.0	0.8011
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10025611 [exp]	4.2	0.7856
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10027341 [exp]	7.3	0.8138
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10014956 [exp]	8.1	0.7580
AT2G22360			DNAJ heat shock family protein...		Lus10000631 [exp]	10.2	0.7862
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10042161 [exp]	12.2	0.7531
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10030125 [exp]	12.6	0.7061
AT2G44870			unknown protein		Lus10020395 [exp]	13.0	0.7740

Compare expression of checked genes

Lus10003806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.