Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66150 1176 / 0 TMK1 transmembrane kinase 1 (.1) AT2G01820 993 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 498 / 2e-161 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 475 / 3e-153 Leucine-rich repeat protein kinase family protein (.1) AT1G23540 254 / 2e-72 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G70460 252 / 7e-72 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT3G07070 241 / 8e-71 Protein kinase superfamily protein (.1) AT3G24790 239 / 1e-70 Protein kinase superfamily protein (.1) AT4G02010 248 / 2e-70 Protein kinase superfamily protein (.1) AT2G20300 248 / 3e-70 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010472 [exp] 1487 / 0 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10039038 [exp] 1285 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 1278 / 0 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 954 / 0 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 938 / 0 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 737 / 0 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 735 / 0 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 550 / 0 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023220 [exp] 433 / 2e-136 AT3G23750 903 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G134900 [exp] 1214 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 1204 / 0 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.010G103000 [exp] 1068 / 0 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G137801 [exp] 1033 / 0 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.016G070500 [exp] 740 / 0 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.001G217700 [exp] 735 / 0 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1) Potri.006G073900 [exp] 511 / 2e-166 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G141000 [exp] 511 / 2e-166 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G203500 [exp] 488 / 2e-157 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.013G035900 [exp] 484 / 4e-156 AT3G23750 1044 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003807 pacid=23145962 polypeptide=Lus10003807 locus=Lus10003807.g ID=Lus10003807.BGIv1.0 annot-version=v1.0 ATGCTTTACCATTACCGCCATTGTCGACAAAGCTTCACTCTTTTCACTCTCTGTCTACTTCTGATTACTGGGTTAACGACCTCCATAACTCAAGATGCTC CAACAATGCTTGCTCTCAAAAGCACTCTCACCAACGCTGGGTCACTCGGGTGGACCGACCCGGATCCCTGCAACTGGAAGAACGTGGGTTGCAATCAGAA CCGGGTCAACCGGATTCAGCTCGGCCGGATGGGTTTGAAAGGAACTTTACCTCCAGATCTCAACAAGCTGGATCAGCTCGAGCAACTTGAGCTCCAATGG AACTCAATCTCGGGTCCTCTGCCAACTCTATCCGGGTTGACTGCGCTCCAGGTTCTAATGATTTCTTCTAACCAGTTCGATTCAATCCCACCCGATTTCT TCCACGGCATGTCGTCTTTACAGTCTGTGGAGATGGATAATAACCCTCTTTCCCCCTGGGAGTTCCCGGAGAGCTTGAGGAACGCTTCTTCTTTGCAGAA GTTCTCTGCCAACTCTGTAAACCTAACCGGTTCGATCCCTGATTTTTTCGGGTCGGATGTTTTCCCCGGGTTGGCTACTCTGCATTTGGCGATTAACAGT CTGGAAGGTACTCTGCCTGCTAGCTTTGGTAGATCGGATATTCAGTCGTTGTGGCTCAATGGACAGAAGAGCACAACCAAGCTCACTGGTGGATTGGAGG TTTTGCAGAATATGACGTCATTGAAAGAAGCTTGGCTTCATGACAATGCCTTCACTGGTCCTTTACCTGATTTCACCGGTTTGGTCAGCTTGGAGAGCTT GAGTTTGAGGGATAACGAGTTGACCGGACCGGTTCCGGATTCCTTAATCGGTTTGGATTCATTGAGATTTGTTAACTTGACTAACAATCTCTTCCAGGGA GCTGTGCCTCAGTTCAAGAATGAGGTTAAAGTGGACATGGTGAAGGACTCTAATAGCTTCTGTTTGTCCGAACCCGGAGAATGCGATTCGAGGGTGGAAG CTTTGATTTCGGTGGCGAAATCGATGGGATACCCTCGGAGGTTTGCTGATAACTGGAAGGGGAACGATCCGTGTTCGAATTGGGTAGGGATCTCTTGTAG CAGTGGGAATAACATCACTGTTGTGAACTTCCAGAAGATGGATCTTTCAGGGACTATATCTCCTGATTTCAGTTCGCTTACTTCGGTCCAAAGGTTGCTT CTTTCCGACAATAACTTGACTGGCACGTTACCTAAGGAGCTTGCTTCCTTGCCGAATCTTAAAGAGGTTGATGTGTCAAATAATCAGATTTCGGGGGAGG TTCCGGGGTTTAAGGACGGGATCGACGTTAAGACAGCTGGGAACAAGAATATAGGTAAGGACATTAGTGTACTACCTCCGGATGCTGCTGGCTCGTCCAG TCAGGTACCGAATGGAGGTACTGGTACCGGAAATGGCACTGGTACAAAATCGAAATCCTCATCGATGGTTATGGTAATTGTTTTCTCCTTGCTTGCTAGT CTACTTGTAATGTTCCTTATTGGCTTGCTGGGTTATAAGAAGAAGCAGAAGTTGAAGTTCAGTAGAGTTCAGAGCCCCAATGCTACAATGGTGATCCATC CTCGCCATTCCGGGTCTGATAACGAGAGTGTAGGCAAAATCACCACCGCAACTACTGCTGGATCGGTGGTAGGAACACTGAGTGAAACTAGGACGACAAT GGCAATGAGCGAGCTAGGAGGAGGGAGTGGAGATCATCAGATTCAGATGGTTGAAGGTGGTGGTGGTGGTGGTAGCAACAGCATGGTCATTTCAATCCAG GTGCTAAGGAACGTTACGGAGAATTTCAGCGAGAAGAACATATTAGGACAAGGAGGGTTCGGAGTGGTGTACAAAGGCGAGCTCCACGATGGCACGAAGA TCGCGGTGAAGAGGATGGAGTCCTGTGTGATGAAGAGCAAAGGAGATTCCGAGTTCATGTCTGAGATATCTGTTCTGACTAAAGTGAGGCATCGACACCT TGTCGGGTTACTTGGATACTGTCTGGATGGACATGAGAAGCTTCTTGTTTACGAGTATATGCCGCAGGGGACACTTAGTAGCCATCTTTTCAGCTGGGAG GGAGAAGGGTTGAAGCCGTTGGATTGGACAAGGAGACTGACTATAGCATTGGATGTTGCTAGGGGTGTTGAGTATCTTCATGGCTTGGCACATCAGAGCT TCATACATAGGGACTTGAAGCCTTCCAACATTCTTCTTGGGGATGATATGAGGGCCAAAGTTGCGGATTTCGGCCTTGTTCGTCTTGCTCCTGAGGGGAA AGGGTCCATTGAGACTAGGATTGCAGGAACTTTCGGGTACTTGGCTCCGGAATACGCTGTTACAGGAAGAGTGACAACAAAAGTTGACGTCTTCAGCTTC GGAGTGATACTAATGGAACTCATAACCGGTCGAAGAGCCCTAGACGAGACCCAACCGGAAGAGAGCATGCACCTAGTAACATGGTTCAAGAGAATGTCCC TCAACAAGGAACAGTTCCGGAAGCAAGCTATCGACCCCACCATCGACCAAACCAACGAGGAAACCCTAGCGAGCGTGACCACAGTGGCTGAATTCGCAGG CCACTGCTGCGCAAGGGAGCCATACCAAAGACCAGACATGGGCCATGCAGTCAACTTGCTGTCTTCCCTCGTCGAGCTATGGAAACCGAGCGACCACACC CCCGAGGACATGTACGGGATTGACCTGGACATGTCGCTGCCGCAGGCATTGCAGAGATGGCAAGCCTATGAAGGCAGGAGCAACCTCGAGTCTTCTTCCT CGTCTTTACTCGTTCCTAGCAGCTTAGACAACACTCAGGCTAGCATCCCTCCCAGGCCGTACGGGTCATCAGAATCGTATTCGTGGCTAATGCGTGGCGA TGATCGACATGGCTAA
AA sequence Show only first row Show all	>Lus10003807 pacid=23145962 polypeptide=Lus10003807 locus=Lus10003807.g ID=Lus10003807.BGIv1.0 annot-version=v1.0 MLYHYRHCRQSFTLFTLCLLLITGLTTSITQDAPTMLALKSTLTNAGSLGWTDPDPCNWKNVGCNQNRVNRIQLGRMGLKGTLPPDLNKLDQLEQLELQW NSISGPLPTLSGLTALQVLMISSNQFDSIPPDFFHGMSSLQSVEMDNNPLSPWEFPESLRNASSLQKFSANSVNLTGSIPDFFGSDVFPGLATLHLAINS LEGTLPASFGRSDIQSLWLNGQKSTTKLTGGLEVLQNMTSLKEAWLHDNAFTGPLPDFTGLVSLESLSLRDNELTGPVPDSLIGLDSLRFVNLTNNLFQG AVPQFKNEVKVDMVKDSNSFCLSEPGECDSRVEALISVAKSMGYPRRFADNWKGNDPCSNWVGISCSSGNNITVVNFQKMDLSGTISPDFSSLTSVQRLL LSDNNLTGTLPKELASLPNLKEVDVSNNQISGEVPGFKDGIDVKTAGNKNIGKDISVLPPDAAGSSSQVPNGGTGTGNGTGTKSKSSSMVMVIVFSLLAS LLVMFLIGLLGYKKKQKLKFSRVQSPNATMVIHPRHSGSDNESVGKITTATTAGSVVGTLSETRTTMAMSELGGGSGDHQIQMVEGGGGGGSNSMVISIQ VLRNVTENFSEKNILGQGGFGVVYKGELHDGTKIAVKRMESCVMKSKGDSEFMSEISVLTKVRHRHLVGLLGYCLDGHEKLLVYEYMPQGTLSSHLFSWE GEGLKPLDWTRRLTIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSF GVILMELITGRRALDETQPEESMHLVTWFKRMSLNKEQFRKQAIDPTIDQTNEETLASVTTVAEFAGHCCAREPYQRPDMGHAVNLLSSLVELWKPSDHT PEDMYGIDLDMSLPQALQRWQAYEGRSNLESSSSSLLVPSSLDNTQASIPPRPYGSSESYSWLMRGDDRHG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10003807 [exp]	0	1
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10030758 [exp]	1.4	0.9301
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Lus10036949 [exp]	3.7	0.8695
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10042211 [exp]	4.0	0.8895
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10013238 [exp]	4.6	0.8925
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	6.8	0.8992
AT1G62981			Protein of unknown function (D...		Lus10024481 [exp]	9.2	0.8720
AT1G77580			Plant protein of unknown funct...		Lus10000186 [exp]	12.5	0.8465
AT1G75590			SAUR-like auxin-responsive pro...		Lus10024322 [exp]	13.3	0.8664
AT1G74160			unknown protein		Lus10034678 [exp]	13.5	0.8538
AT5G20730	ARF	MSG1, IAA21, BI...	MASSUGU 1, indole-3-acetic aci...		Lus10033635 [exp]	13.7	0.8594

Compare expression of checked genes

Lus10003807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.