Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32260 413 / 3e-145 ATCCT1 phosphorylcholine cytidylyltransferase (.1) AT4G15130 403 / 8e-142 ATCCT2 phosphorylcholine cytidylyltransferase2 (.1) AT2G38670 113 / 4e-28 PECT1 phosphorylethanolamine cytidylyltransferase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010471 [exp] 556 / 0 AT2G32260 466 / 3e-166 phosphorylcholine cytidylyltransferase (.1) Lus10027337 [exp] 422 / 1e-148 AT2G32260 428 / 4e-151 phosphorylcholine cytidylyltransferase (.1) Lus10038368 [exp] 378 / 5e-132 AT2G32260 398 / 2e-140 phosphorylcholine cytidylyltransferase (.1) Lus10036229 [exp] 377 / 1e-131 AT2G32260 400 / 3e-141 phosphorylcholine cytidylyltransferase (.1) Lus10039039 [exp] 242 / 2e-79 AT2G32260 248 / 5e-82 phosphorylcholine cytidylyltransferase (.1) Lus10000195 [exp] 214 / 9e-69 AT4G15130 244 / 5e-81 phosphorylcholine cytidylyltransferase2 (.1) Lus10027604 [exp] 117 / 3e-29 AT2G38670 546 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10022942 [exp] 116 / 4e-29 AT2G38670 539 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10017147 [exp] 106 / 8e-26 AT2G38670 506 / 1e-179 phosphorylethanolamine cytidylyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G017500 [exp] 452 / 7e-161 AT2G32260 421 / 2e-148 phosphorylcholine cytidylyltransferase (.1) Potri.006G006700 [exp] 433 / 2e-153 AT2G32260 443 / 1e-157 phosphorylcholine cytidylyltransferase (.1) Potri.001G159400 [exp] 396 / 4e-139 AT2G32260 418 / 4e-148 phosphorylcholine cytidylyltransferase (.1) Potri.003G075000 [exp] 395 / 1e-138 AT2G32260 417 / 1e-147 phosphorylcholine cytidylyltransferase (.1) Potri.018G132700 [exp] 117 / 2e-29 AT2G38670 510 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G071000 [exp] 115 / 7e-29 AT2G38670 521 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G113900 [exp] 109 / 8e-27 AT2G38670 668 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.016G143600 [exp] 109 / 8e-27 AT2G38670 682 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10003808 pacid=23145976 polypeptide=Lus10003808 locus=Lus10003808.g ID=Lus10003808.BGIv1.0 annot-version=v1.0 ATGGACGTCCAAGTACAGAAAACCAACGGGAATCTCGTCCCTCCTGCTGCTCAATCGGGAAACGGCAGTTCCGATCAGCCACCGCTTCCTTCCGACAGGC CTGTCCGCGTTTACGCCGACGGGATCTACGATCTCTTCCACTTCGGCCACGCAAGGTCCCTCGAACAGGCCAAGAAATCGTTTCCGAATGCCTATTTGCT AGTTGGATGCTGTAACGATGAAATTACGCATACGTTCAAGGGCAAAACGGTGATGACGGAAGATGAGAGATATGAATCGCTTCGTCACTGCAAATGGGTG GATGAAGTGATTACTGATGCACCTTGGGTGATTAACCAGGAGTTTCTGGATAAACACAAGATTGATTATGTTGCTCATGACGCACTACCATATGCAGATG CAAGTGGAGCTGGGAAGGATGTTTATGAGTTTGTGAAAAAAGTTGGGAGGTTCAAAGAAACGAAAAGAACTGATGGGATCTCTACATCAGATATCATAAT GAGGATTCTTAAAGACTACAATCAGTATGTCACACGTAATTTGGATCGTGGGTACACGAGGAAGGAACTCGGTGTCAGCTATGTTAAGGAAAAGCGACTG AGGGTCAACATGAGGTTGAAGAAACTACAAGAGAAAGTAAAAGAGCAACAAGAGAAAGTTGGCGAAAAGATTCAAACTGTGACAATGCATCGTAATGAAT GGGTCGACAACGCTGATCGTTGGGTTGCTGGTTTCCTTGAGATGTTCGAGGAAGGTTGCCATAAAATGGGCACGGCCATTCGAGATCGAATCCAAGAGCG GCTGATGGGCCAGCAGGCAAAGCGGATGCTTCGAAACAGTAAGGAAGGCGAGGAAGATGGCCAGGAAGAATACTACGACGATGACTTCGATGACGATGAT TATGAGTACGAGTACGTAGATGGGGAGGAAGAGTATTACGACGATGAGCAACAACCACAACAACATTCGAGTCAGAAGGATGAGAAAGCTGTCGAAGGAG ACCGATGA
AA sequence Show only first row Show all	>Lus10003808 pacid=23145976 polypeptide=Lus10003808 locus=Lus10003808.g ID=Lus10003808.BGIv1.0 annot-version=v1.0 MDVQVQKTNGNLVPPAAQSGNGSSDQPPLPSDRPVRVYADGIYDLFHFGHARSLEQAKKSFPNAYLLVGCCNDEITHTFKGKTVMTEDERYESLRHCKWV DEVITDAPWVINQEFLDKHKIDYVAHDALPYADASGAGKDVYEFVKKVGRFKETKRTDGISTSDIIMRILKDYNQYVTRNLDRGYTRKELGVSYVKEKRL RVNMRLKKLQEKVKEQQEKVGEKIQTVTMHRNEWVDNADRWVAGFLEMFEEGCHKMGTAIRDRIQERLMGQQAKRMLRNSKEGEEDGQEEYYDDDFDDDD YEYEYVDGEEEYYDDEQQPQQHSSQKDEKAVEGDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10003808 [exp]	0	1
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10042055 [exp]	1.0	0.9450
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10008868 [exp]	1.4	0.9380
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	1.7	0.9337
AT5G58030			Transport protein particle (TR...		Lus10003350 [exp]	2.4	0.9195
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10025309 [exp]	4.0	0.9284
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10026038 [exp]	5.7	0.9132
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	6.2	0.8991
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026070 [exp]	6.8	0.8980
AT4G12230			alpha/beta-Hydrolases superfam...		Lus10032207 [exp]	7.4	0.9066
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10018749 [exp]	7.7	0.9210

Compare expression of checked genes

Lus10003808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.