Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05680 337 / 8e-112 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05675 337 / 8e-112 UDP-Glycosyltransferase superfamily protein (.1) AT2G43820 313 / 9e-103 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT2G31790 311 / 7e-102 UDP-Glycosyltransferase superfamily protein (.1) AT2G43840 298 / 7e-97 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT2G31750 293 / 6e-95 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT1G24100 261 / 3e-82 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT3G21560 219 / 1e-65 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 217 / 5e-65 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT1G05530 216 / 7e-65 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010468 [exp] 731 / 0 AT1G05675 368 / 7e-124 UDP-Glycosyltransferase superfamily protein (.1) Lus10039041 [exp] 509 / 2e-179 AT1G05675 343 / 3e-114 UDP-Glycosyltransferase superfamily protein (.1) Lus10024118 [exp] 370 / 3e-124 AT1G05675 375 / 2e-126 UDP-Glycosyltransferase superfamily protein (.1) Lus10024117 [exp] 350 / 3e-116 AT1G05675 385 / 4e-130 UDP-Glycosyltransferase superfamily protein (.1) Lus10006352 [exp] 333 / 4e-110 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10008742 [exp] 327 / 9e-108 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10006353 [exp] 316 / 2e-103 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006721 [exp] 315 / 2e-103 AT2G43820 392 / 9e-134 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020559 [exp] 314 / 1e-102 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G140300 [exp] 370 / 1e-124 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032300 [exp] 363 / 6e-122 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G179300 [exp] 362 / 2e-121 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 352 / 1e-117 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032733 [exp] 352 / 1e-117 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032500 [exp] 349 / 2e-116 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.001G389200 [exp] 341 / 3e-113 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140500 [exp] 325 / 5e-107 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.014G175000 [exp] 317 / 5e-104 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.015G071900 [exp] 315 / 2e-103 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10003809 pacid=23145958 polypeptide=Lus10003809 locus=Lus10003809.g ID=Lus10003809.BGIv1.0 annot-version=v1.0 ATGGCTCTATCACTAAAAGAAACACCTTCAGCGACGGTGAAACCTCACGTTGTCGTTATACCGTGGCCATTAATGGGCCACATTAACCCAGCAGCCCAGT TCTCCAAAACCCTCGTCGCTAAAGGTCTATCTGTTACCCTTTTAATCTTCACCGAGAAAAAGCTCTTCCATGAAGAAGGTGGTCCGGTCGTCGTGGAGCA GATCTCCGACGAGGGGATCCTCACCGACCCGATCGGAGAGGACTACTACGAGAGGTACAGAACAGTTGTCTGCCGGGAGCTGCTGAAGTTCATCGCCGGC AGCAACGATAGGCCACGTGGGCGGCCATGCTGCGTGGTGTACGACTCGCTGTTTCCGTGGGTGTTACCGACGGTTAAGGAGCTTGGGATGATGGGGGCGC CGTTCTTCACGCAGCCCATGGCTGTTAACGCCGTGTACTTGAACGTGATGGAAGGGAGGCCAGCGGCGGAGGGGTTTCCGGCGGAGATGGAGGCCGCCGG TGATCTGCCGTCTTTTGTTACCGACTTGGATACTTACCCGGGGACTTTGGAGCTCGTGACGGGGCAGCTTCGTAATGTTGGGGAAGCTGATTGGGTGTTT TGCAATACTTTCTATAGCTTGGAAGAAAAGCTGCTCAATTGGATGACTAAGCATTCTGTCGAAATGAAGTCAGTGGGTCCTACTATCCCACCGACATGTT TTGGCAAAGAGAAATCATGTGAGACGATAATACAATATGACGTCGTCACACTATTCGATCACACCAGTTCAGAAGCCAACATTAAGCAATGGCTTGACAT GAAACCGGTTGGTTCCGTTATCTATGCTTCGTTGGGTAGTATATCGAACACATCTAAAAGTCAAATAACCGAAATGGTCGAAGCCCTCCTACTCAGCAAC ATGCCGTTTATATGGGTGGTTCGAGAATCTGAACAATACAAGCTACCACACGACTTCACCTCTAATACCACATGCCTTGTCGTAGAGTGGTGTCACCAGT CGGAGGTCTTGGCTCACCCTTCTGTTGGCTGCTTTGTGACTCACTGCGGATGGAACTCAACGATGGAAGCGATTAGCTTAGGAGTGCCGATGGTGACGTT GCCAATTTGGGTGGACCAACCGACCAATGCAAAGTTTGTGGAGGATGTTTGGCACGTGGGGGTACGCGCAAAGGCTGATGTGGCTGGTGGGGTGGTCACA AAGGAGGAAATCGGACGACGAATCAAGGAAGTGATGGAAGGAGAGAGTGGGGAAGAGATTATGAGGAACGTGGAGAAGTGGAAGAGATTAGCACATGAAG CTGTCGCCACCGATGGAAGTTCATATAAGAATATTGACGAGTTTGTGACCGCCTTACAGAGCCGTGGCTAA
AA sequence Show only first row Show all	>Lus10003809 pacid=23145958 polypeptide=Lus10003809 locus=Lus10003809.g ID=Lus10003809.BGIv1.0 annot-version=v1.0 MALSLKETPSATVKPHVVVIPWPLMGHINPAAQFSKTLVAKGLSVTLLIFTEKKLFHEEGGPVVVEQISDEGILTDPIGEDYYERYRTVVCRELLKFIAG SNDRPRGRPCCVVYDSLFPWVLPTVKELGMMGAPFFTQPMAVNAVYLNVMEGRPAAEGFPAEMEAAGDLPSFVTDLDTYPGTLELVTGQLRNVGEADWVF CNTFYSLEEKLLNWMTKHSVEMKSVGPTIPPTCFGKEKSCETIIQYDVVTLFDHTSSEANIKQWLDMKPVGSVIYASLGSISNTSKSQITEMVEALLLSN MPFIWVVRESEQYKLPHDFTSNTTCLVVEWCHQSEVLAHPSVGCFVTHCGWNSTMEAISLGVPMVTLPIWVDQPTNAKFVEDVWHVGVRAKADVAGGVVT KEEIGRRIKEVMEGESGEEIMRNVEKWKRLAHEAVATDGSSYKNIDEFVTALQSRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05675			UDP-Glycosyltransferase superf...		Lus10003809 [exp]	0	1
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10036730 [exp]	4.7	0.7869
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10008055 [exp]	10.4	0.7219
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10035522 [exp]	12.2	0.7026
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10024315 [exp]	13.9	0.6630
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Lus10030212 [exp]	14.5	0.6793
AT1G18160			Protein kinase superfamily pro...		Lus10038955 [exp]	22.4	0.7079
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10033187 [exp]	27.1	0.6868
AT5G66560			Phototropic-responsive NPH3 fa...		Lus10041276 [exp]	33.5	0.6580
AT1G79720			Eukaryotic aspartyl protease f...		Lus10041621 [exp]	35.6	0.6867
AT1G45000			AAA-type ATPase family protein...		Lus10028807 [exp]	39.3	0.6601

Compare expression of checked genes

Lus10003809 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.