Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22200 758 / 0 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT1G80600 154 / 3e-41 WIN1 HOPW1-1-interacting 1 (.1) AT5G46180 145 / 7e-38 DELTA-OAT ornithine-delta-aminotransferase (.1) AT3G08860 144 / 2e-37 PYD4 PYRIMIDINE 4 (.1) AT2G38400 142 / 6e-37 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT4G39660 138 / 1e-35 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT5G63570 83 / 1e-16 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1) AT5G57590 79 / 2e-15 BIO1 biotin auxotroph 1, adenosylmethionine-8-amino-7-oxononanoate transaminases (.1) AT3G48730 74 / 1e-13 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT4G15090 72 / 6e-13 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010465 [exp] 1053 / 0 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10008025 [exp] 155 / 3e-41 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10038510 [exp] 154 / 5e-41 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1) Lus10025262 [exp] 154 / 5e-41 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10023299 [exp] 152 / 2e-40 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10031196 [exp] 146 / 2e-38 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10029922 [exp] 144 / 1e-37 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10004480 [exp] 141 / 2e-36 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10009086 [exp] 132 / 2e-33 AT3G08860 625 / 0.0 PYRIMIDINE 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G020900 [exp] 771 / 0 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.016G018500 [exp] 755 / 0 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.017G053500 [exp] 153 / 4e-41 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.007G085600 [exp] 147 / 7e-39 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.006G106800 [exp] 146 / 2e-38 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.016G132200 [exp] 145 / 5e-38 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.011G082800 [exp] 144 / 2e-37 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1) Potri.005G095800 [exp] 137 / 3e-35 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.006G020600 [exp] 101 / 2e-22 AT4G15090 1078 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.006G020700 [exp] 78 / 6e-15 AT3G22170 1184 / 0.0 far-red elongated hypocotyls 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00202 [flax] [poplar] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Lus10003810 pacid=23145977 polypeptide=Lus10003810 locus=Lus10003810.g ID=Lus10003810.BGIv1.0 annot-version=v1.0 ATGCTCGTGGACCCACAAGACGATATGCATCAAGCAGAAAATCTAAGCTCGGATGGGATTGCTCTCAACGGTTATTTCGTTGCTCCACAGGTGCAGCTAA ACTTGATGGATCCACCTCCTGATGCTTATTTTGTTAGTCAGCCAAGTATGCAGGTATTGGGACCTCTGAATTCAATGCCCTCCAGTAGCGATGGATTCTT CACAGGGCACGGTCTGGGTCCGTTCGATTTCCGGAATCCAAGTACCTACAGCTACAGTTTGCAGGGTAGCTATGTCTATGATGCTGATGGGAAGAAATAC ATTGATGCTCTTGCTGGTCTCTGGTCGACTGCTTTAGGTGGTAACGAGCCACGCCTTGTTGAAGCTGCTGTTGGACAGTTGAATACCTTGCCGTTCTACC ACTCTTTTTGGAATCGTACAACAAAGCCTTCTCTGGATCTTGCTAAGGATCTTCTGGATATGTTTACTGCAAACAAGATGGCGAAAGCTTTCTTCACCAA TAGCGGATCAGAAGCCAACGACACACAGGTGAAGCTGGTTTGGTACTATAACAATGCCCTTGGGAGACCAGAGAAGAAGAAGTTCATAGCCCGAACAAAA TCGTATCACGGCTCAACGTTGATTTCAGCCAGTCTTTCCGGCCTTACGCCTATGCACAACACGTTCGATCTCCCGGCACCTTTTGTGCTGCACACTGACT GTCCACATTACTGGCGATTTCATCTTCCTGGTGAGACTGAGGAGGAATTCGCGACTAGATTAGCGAAAAATCTAGAGGATCTTATCCTAAAAGAAGGACC TGATACGATAGCTGCATTTATCGCTGAGCCAGTCATGGGCGCTGGTGGCGTTATTCCTCCTCCTGCAACTTACTTCGATAAGATTCAGCCAGTCCTGAAG AAATATGACATTCTGTTAATTGCAGATGAGGTAATCTGTGCATTCGGAAGACTTGGATCAATGTTCGGGTGCGACAAATACAACATCAAACCAGACCTTG TATCCCTGGCTAAGGCTCTCTCTTCTGCATACATGCCAATTGGTGCAGTCCTTGTGAGCCCTAAAGTCAACGATGTGATTCACTCTCAAAGCAATAAACT AGGTACATTTTCTCATGGATTCACCTATTCCGGCCATCCTGTTGCTTGCGCTGTAGCAATCGAAGCCCTCAAGATCTACAAGGAAAGAGACATTCCTGGA CATGTTACCAGCATTGCACCAAGGTTCCAAGACGGCCTAAAGGCTTTTGCAGACAGCCCTATAATAGGAGAGATTCGTGGAACGGGATTGATCCTTGCCA CAGAGTTCGTTGACAACAAGTCACCTAATGATCCATTCCCCCCCGAATGGGGAATAGGACCGTTCTTCGGAGCAGAATGCCAGAAGCTCGGGATGCTGGT ACGCATAGCTGGAGACACCATCATGATGTCCCCGCCTCTTATCATGAGCACTGAACATGTTGATGAGATCATCAGCAAGTATGAGAAAGCACTGAGGGCT ACAGAGAAGAGGGTCCAAGAGCTGAAATCGAAGCACTCGAAGTAA
AA sequence Show only first row Show all	>Lus10003810 pacid=23145977 polypeptide=Lus10003810 locus=Lus10003810.g ID=Lus10003810.BGIv1.0 annot-version=v1.0 MLVDPQDDMHQAENLSSDGIALNGYFVAPQVQLNLMDPPPDAYFVSQPSMQVLGPLNSMPSSSDGFFTGHGLGPFDFRNPSTYSYSLQGSYVYDADGKKY IDALAGLWSTALGGNEPRLVEAAVGQLNTLPFYHSFWNRTTKPSLDLAKDLLDMFTANKMAKAFFTNSGSEANDTQVKLVWYYNNALGRPEKKKFIARTK SYHGSTLISASLSGLTPMHNTFDLPAPFVLHTDCPHYWRFHLPGETEEEFATRLAKNLEDLILKEGPDTIAAFIAEPVMGAGGVIPPPATYFDKIQPVLK KYDILLIADEVICAFGRLGSMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPKVNDVIHSQSNKLGTFSHGFTYSGHPVACAVAIEALKIYKERDIPG HVTSIAPRFQDGLKAFADSPIIGEIRGTGLILATEFVDNKSPNDPFPPEWGIGPFFGAECQKLGMLVRIAGDTIMMSPPLIMSTEHVDEIISKYEKALRA TEKRVQELKSKHSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Lus10003810 [exp]	0	1
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	1.0	0.9571
AT5G48630			Cyclin family protein (.1.2)		Lus10003151 [exp]	2.8	0.9501
AT1G22540			Major facilitator superfamily ...		Lus10016932 [exp]	5.1	0.9280
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	5.2	0.9487
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10039599 [exp]	5.5	0.9469
AT1G70410		ATBCA4	beta carbonic anhydrase 4 (.1....		Lus10030614 [exp]	5.7	0.9239
AT4G00755			F-box family protein (.1.2)		Lus10015001 [exp]	6.3	0.9486
AT3G13620			Amino acid permease family pro...		Lus10013757 [exp]	6.9	0.9386
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024362 [exp]	7.1	0.9475
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10022186 [exp]	7.3	0.9419

Compare expression of checked genes

Lus10003810 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.