Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32240 735 / 0 unknown protein AT1G05320 176 / 3e-45 unknown protein AT5G11390 46 / 0.0002 WIT1 WPP domain-interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010464 [exp] 2092 / 0 AT2G32240 840 / 0.0 unknown protein Lus10034351 [exp] 53 / 2e-06 AT5G11390 444 / 1e-146 WPP domain-interacting protein 1 (.1) Lus10005102 [exp] 50 / 7e-06 AT5G11390 300 / 5e-95 WPP domain-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G018700 [exp] 1251 / 0 AT2G32240 830 / 0.0 unknown protein Potri.006G021200 [exp] 1234 / 0 AT2G32240 838 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003812 pacid=23145950 polypeptide=Lus10003812 locus=Lus10003812.g ID=Lus10003812.BGIv1.0 annot-version=v1.0 ATGGAGCAAGAAACGCAAGTGAGTTCAGAAGTCCCAGTGGTCAAGGTGCTAGAAGCTGACAGTAAAGCTGATATTTTTGAGGTCACAAATGGAGACTTCC CGCAAGAACATAAACCAGAAAAGAGAGAGGAAGATGAAACAGATGGAGAATTCATCAAAATAGAGAGAGAATCATTGGACGTTAAAGATGGATCTCATGC ACCCGTTGCCGCTCCTTCTGAGGATGACAACCCATCTGTTAGTGAGAAATCTGCAAGCAGCTTGACCAGAGAATCGCTAGAAGCCGAGGAGAAGATCAAG GAACTCAAATTGGAATTGGAGAGAGTAGCTGAGGCATTGAAGCAGTCTGAATCCGAAAATGCTGCGGTCAAGAATGAAGCTCTACTCGCGAGTGAGAAAT TGGAAGGATCCGAAACCAAATACAAGGAGCTTGAACTTGATCACAAGAAGTTGCAGGAGCAGGTCGATGAAGCCGAGGAGAGATATGCTTCACAGCTCAA AAGCTTGCAGGAGGCTCTTGAAGCACAAGAACTAAAGCACAAGGAATTGGTTGAGGTTAAAGAAGCATTTGATTCTCTTAACTTGGACCTTGATAGCTCA CGAAAGAGAATCGAGGAGCTGGAAAGTGGGCTTCAGCAATCTATTGATGATGCAAAGAAGTTTGAGGAACTGCATAAGCAAAGCGGTTCTGATGCCGAGT CCCATTCCCAAAGAGCTTCCGAATTCGAGAAGCTCCTGGAGGCTGCTAAGCTTAGTGCTAAAGAAATGGAAAATCAGATGGGTATACTTAAGGGGGAGGT GACAGGTCTTTATGCAAAGATTTCAGAGAACCAGAAAGTTGAAGAAGCTCTTCAGAATACCACGAGTGAACTCTCCAAAGTTCAAGAAGATTTCGCTCTT TCAAAGTCGCAACTGCTGGACTTGGAGCAAAGTCTTTCTTCGAAGGAAGCTGTTCTAAGCAAACTGACTGAAGAAATGGAGTTGACAAAAGTTTCAGGAT CGAAGCTGAAGGAAGACTTCTCAGCTCTTGAGAATGCGCTTGCTTTGACTAAGGAAGATGCACAGGCGAAGGCTTCTGAGTTAGAAAGCATCAAGCTGAA GTTTCAGGAGGAGATTGATGCGAGACAGACCATCGAATCTGGACTGAAGGATCAGGAAGCACAGGTTTCAGCATTACAGGAAGACCTGTCTAAGATTATA AAGGAAAAGGAAGATCTGGAGTCAACTGTTGCTGATCTCACCGGTGATGCAGCACAGGCTAAACAGCTGTGCAGTGACCTCGAAGAAAAATTGAAGCTCT CAGCTGAAAATTTCTCCAAAACTGATTCCCTTCTGTCTGAATCACTGGCGAATAATGCCGAGCTTGAACAGAAGTTGAAATCCCTTGAAGAGCATCATAC TGAAGCTGGAGTTGTTGCTGCAACTGCTACTCAGAAGAGTTTGGAGCTTGAGGACTTGATCAAAGCTTCAAACGAAGCAGCATCCGAGGCTCAATCCCAG CTCAGAGAGCTCGAGACACGACTCATTGCATCAGAACAGAAGAATTTGGAGCTCGATCAGCAGTTGAATTTGATTCAACTGAAGAATCGTGATGCTGAGA GGGAAATCGGAGAGCTTTCGGACAAAGTGTCTGAACTCAGTTCGGGACTGAGGGGGGCAGAGGAAGAAAAGAAAATCTTGGCTGGTCAGATACAGGAATA CCAAGAAAAGGTTATCCATCTCGAAACTGAGTCATCGTCTCGGCACCTAGAGTTGGAAGACAAGCTGAAGAAAGCCACAGAAAAACATGTCGAGATTGAG AACCGTGCGACTGAGACTCATGAAAGAAGCCTTGAACTCGAAAACTTGATTCACAGCTCCCGTTCGAAATCCGAGGATGCTGAGAAGAAGGTTGGCGAGC TGGAGCTATTGCTTGAAGCTGAGAAGTACAGGATTCAGGAACTTGAAGAGCAAATCAACACGCTAGAAAAGAAATGTGTCGAGGCGGAAGGCGACTCAGA TAAGTACAAGCTAAAGGTTTCCGAACTCGCATCTGAACTTGAAGCATTCCAGATGAAGGCATCGAGCCTTGAAATCGCAGTTCAAATGGCTACCGACAAA GAGAAAGAGTTGACAGAAAGCTTAAACTTGGCAGCAGAAGAGAAGAAAAGGCTAGAAGATGCATCAAGCTCTGCAAATGAGAAGCTTAGCGAGGCTGAGA ATCTTGTTGAGGTATTGCGTAACGAGATAACCGTTACGCAGGAGAAGTTGCAGAGCATCGAGAGTGATCTGACCACTGCTGGGTTGAAAGAATCCGACAT AATGACTAAGCTCAAAGATGCAGAGGAGAAACTTGCGCAGCAAGAAGTGATGTTCGGTGAAGTTTCAGCCAGAAAGACTGAGCTTGAATCATTGACAGAA TCCCTTTCTAGAGATTCGGAACTAAAGCTTCAGGAAGCCATTGCAAGCTTCAGCGACAAGGACTCCGAGGTGAAGTCCCTGTTTGAGAAGCTGCAGAAGC TTGAGGAACAAGTTAAGGCATACCAAACCCAGCTGGCCGAAGTAACCGAGAAATCCACTTCATTGAAAGAAGAGCTGGATTCCTCATTCATGAAAGTGAC ATCATTCGAAACCGAAAATGAAGAACTCAATAGGAAGATCTTGGATGCAGAGAGCAAAGTCTCGAATGCTTCGTCTGATAACCAGCAACTTATTGAGACA AATACCGAGTTGCAGATCAAGGTCGAGGAACTCAATCAATTGCTGGAATCAGCTCTATCGGAGAAGGACAACGCAAGCCAACAGCTTGCTTCTCATACTA CTGCCATCGCCGAAATAACAGACAAGCATTCGAGAGCAATCGAGCTTCATTCTGCTTCCGAGACAAACTACCAAGAGGCAGTTCAGAGGCTTTGTGAGAA AGAATCAGAAGTTAACAAACTGAATGAGAAGCTCAATTCGCTCGAGGTTCAGGTGAAAGTCCACGAAGAACAAGCTTCAGAAGCACAGGGAAGCTCGAAA GCTACGAAGATTCAGCTAGAGGAAGCACTCCAAAAGCTGCAACATCTAGAAGCAGTGATTGAGGAGCTTCAAGCGAAGTCCGGTCATTTCGAAAAGGAGA GTGGAGGACTAGCCGAGGCTAATTTGAAGCTTACCGAAGAGTTGGCTTCGTACGAGTCCAAACTAAGTGACTTGCAATCCAAGCTTTCTGCAGCCCTCTC AGAGAAAGATGGAGCTGTGGAACAGCTGAACTCTTCGAAGAAAACCGTGGAGGATCTCACACAGCAGCTCTCTGCAGAAGCAGAGAAGCTACAATCTCAG ATTTCCAAGGTCATGGAAGAGAACAGCCAGCTCAACGAGGTGCATCAAAGCACAAAGAACGAACTTCAAACGATCATAGTTCAGCTCACAGAGCAGCTGA AAGAGCAGAAGGAGAAGGAAGATGCCTCGAAGCTGTCACTGCAAACCCGTCTAAAGGAGCTCGAGGAACAGAAAGGGACAAGTTCGGACAAAGAGCGGGA AACCGAAGCAACAGTAAAGAAAGCCCTCGAAAGCCTGGAAGCCAAGAACAAAGAAGTCGCGAATCTTGAGAAGCAAGTCAAAGACCTGCAGCTTGCCACG GCTAAATCTGTCGAGAAGGATGGAGCAGAGATCAAATCAAGAGACATTGGAGCCAGCCTTCCTACTACTCCTTCAAAGAGGAAGAACAAGAAGAAGCTTG AAGCTCAGGCTTCATCAGCATCTGCAGAGACGACCCTTACAAGAACTGCTTCCACCGAGGGTCCTGCAGGAGCATTGAACATCAAGCTCATCCTCGGGGT GGCCATCGTATCGATTGTTATGGGTATAGTTCTTGGGAAGATCTACTAG
AA sequence Show only first row Show all	>Lus10003812 pacid=23145950 polypeptide=Lus10003812 locus=Lus10003812.g ID=Lus10003812.BGIv1.0 annot-version=v1.0 MEQETQVSSEVPVVKVLEADSKADIFEVTNGDFPQEHKPEKREEDETDGEFIKIERESLDVKDGSHAPVAAPSEDDNPSVSEKSASSLTRESLEAEEKIK ELKLELERVAEALKQSESENAAVKNEALLASEKLEGSETKYKELELDHKKLQEQVDEAEERYASQLKSLQEALEAQELKHKELVEVKEAFDSLNLDLDSS RKRIEELESGLQQSIDDAKKFEELHKQSGSDAESHSQRASEFEKLLEAAKLSAKEMENQMGILKGEVTGLYAKISENQKVEEALQNTTSELSKVQEDFAL SKSQLLDLEQSLSSKEAVLSKLTEEMELTKVSGSKLKEDFSALENALALTKEDAQAKASELESIKLKFQEEIDARQTIESGLKDQEAQVSALQEDLSKII KEKEDLESTVADLTGDAAQAKQLCSDLEEKLKLSAENFSKTDSLLSESLANNAELEQKLKSLEEHHTEAGVVAATATQKSLELEDLIKASNEAASEAQSQ LRELETRLIASEQKNLELDQQLNLIQLKNRDAEREIGELSDKVSELSSGLRGAEEEKKILAGQIQEYQEKVIHLETESSSRHLELEDKLKKATEKHVEIE NRATETHERSLELENLIHSSRSKSEDAEKKVGELELLLEAEKYRIQELEEQINTLEKKCVEAEGDSDKYKLKVSELASELEAFQMKASSLEIAVQMATDK EKELTESLNLAAEEKKRLEDASSSANEKLSEAENLVEVLRNEITVTQEKLQSIESDLTTAGLKESDIMTKLKDAEEKLAQQEVMFGEVSARKTELESLTE SLSRDSELKLQEAIASFSDKDSEVKSLFEKLQKLEEQVKAYQTQLAEVTEKSTSLKEELDSSFMKVTSFETENEELNRKILDAESKVSNASSDNQQLIET NTELQIKVEELNQLLESALSEKDNASQQLASHTTAIAEITDKHSRAIELHSASETNYQEAVQRLCEKESEVNKLNEKLNSLEVQVKVHEEQASEAQGSSK ATKIQLEEALQKLQHLEAVIEELQAKSGHFEKESGGLAEANLKLTEELASYESKLSDLQSKLSAALSEKDGAVEQLNSSKKTVEDLTQQLSAEAEKLQSQ ISKVMEENSQLNEVHQSTKNELQTIIVQLTEQLKEQKEKEDASKLSLQTRLKELEEQKGTSSDKERETEATVKKALESLEAKNKEVANLEKQVKDLQLAT AKSVEKDGAEIKSRDIGASLPTTPSKRKNKKKLEAQASSASAETTLTRTASTEGPAGALNIKLILGVAIVSIVMGIVLGKIY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32240			unknown protein		Lus10003812 [exp]	0	1
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10043432 [exp]	1.4	0.8942
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10026741 [exp]	3.5	0.8687
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10029991 [exp]	3.7	0.8523
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10005191 [exp]	3.9	0.8590
AT5G46630			Clathrin adaptor complexes med...		Lus10030961 [exp]	4.0	0.8554
AT5G15400			U-box domain-containing protei...		Lus10005222 [exp]	6.2	0.8311
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	9.7	0.8219
AT2G32850			Protein kinase superfamily pro...		Lus10003916 [exp]	13.0	0.8140
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	22.2	0.8246
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Lus10036160 [exp]	26.9	0.7628

Compare expression of checked genes

Lus10003812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.