Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03490 224 / 9e-74 AtPEX19-1, PEX19-1 peroxin 19-1 (.1) AT5G17550 223 / 2e-73 AtPEX19-2, PEX19-2, PEROXIN19-2 ,PEROXIN 19-2 peroxin 19-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010463 [exp] 328 / 7e-115 AT3G03490 275 / 1e-93 peroxin 19-1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077000 [exp] 252 / 8e-85 AT5G17550 319 / 8e-111 peroxin 19-2 (.1) Potri.001G157900 [exp] 241 / 3e-80 AT5G17550 288 / 7e-99 peroxin 19-2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04614 [flax] [poplar] Pex19 Pex19 protein family
Representative CDS sequence Show only first row Show all	>Lus10003813 pacid=23145969 polypeptide=Lus10003813 locus=Lus10003813.g ID=Lus10003813.BGIv1.0 annot-version=v1.0 ATGGCGGAGCCCCATCATGACGACTTAGACCAGCTCCTCGACAGTGCTCTCGATGATTTCCAGACTCTCAACCTAGTGCAACAGTCCTCACAAAGCGATG GTGGTGGTGGTTCTTCAGCTGGGGTTCAGGGTTTAGGGATGGGATTGCCGGATTTGAAGAGCAAGAAGAAAGGGAAAAAGGCGGCTTCCGCGGCCGATGA TCACGTGGCGGAGGCGCTAGATAAGCTGCGGGAGCAGACTAAGGAGGCTGTGAAAGGATTGGAATCTGTTAAAGGTGATGATAAGGATGCTTTGATGGAG GACTGGGTTAAGCAGTTCGAGGAGCTTGCATCTACCCAGGACATGGGATCTCTAGTGGAGTCCATGATGCAGCAGCTACTGTCCAAGGAGATCCTTCACG AACCCATGAAGGAAATTGAAGGGCGATACCCGACATGGTTGAAAGACCACGAAACGACTCTAAGCAAAGAAGAATATGAACGTTACTCCAAACAGTTTGA ACTCATAAAGGTTCTCAACGAGGTTTACGAGAACGATCCAAATAACTACACCAAGATCACAGATCTCATGCAGAAGATGCAAGAATGCGGTCAACCACCG GATGAAATCGTCCGGGAACTGGCACCTGATCTTGATTTGGCTACTCTTGGTCAGATAACACCCGAGATGCTCGATTCCCAACAGAACTGTAGCATAATGT GA
AA sequence Show only first row Show all	>Lus10003813 pacid=23145969 polypeptide=Lus10003813 locus=Lus10003813.g ID=Lus10003813.BGIv1.0 annot-version=v1.0 MAEPHHDDLDQLLDSALDDFQTLNLVQQSSQSDGGGGSSAGVQGLGMGLPDLKSKKKGKKAASAADDHVAEALDKLREQTKEAVKGLESVKGDDKDALME DWVKQFEELASTQDMGSLVESMMQQLLSKEILHEPMKEIEGRYPTWLKDHETTLSKEEYERYSKQFELIKVLNEVYENDPNNYTKITDLMQKMQECGQPP DEIVRELAPDLDLATLGQITPEMLDSQQNCSIM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10003813 [exp]	0	1
					Lus10019472 [exp]	6.6	0.9043
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10020264 [exp]	10.9	0.9039
AT5G50740			Heavy metal transport/detoxifi...		Lus10039074 [exp]	12.8	0.8465
AT3G04030	GARP		Homeodomain-like superfamily p...		Lus10002629 [exp]	14.0	0.9022
AT3G52770		ZPR3	LITTLE ZIPPER 3, protein bindi...		Lus10021375 [exp]	16.4	0.8530
AT4G35000		APX3	ascorbate peroxidase 3 (.1)		Lus10000180 [exp]	16.5	0.8995
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	16.9	0.8967
AT4G17540			unknown protein		Lus10040155 [exp]	17.0	0.8602
AT1G79910			Regulator of Vps4 activity in ...		Lus10025779 [exp]	20.5	0.8929
AT5G05570			transducin family protein / WD...		Lus10027810 [exp]	22.2	0.8888

Compare expression of checked genes

Lus10003813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.