Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15000 201 / 1e-67 Ribosomal L27e protein family (.1.2) AT3G22230 200 / 1e-67 Ribosomal L27e protein family (.1) AT2G32220 184 / 2e-61 Ribosomal L27e protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010461 [exp] 224 / 4e-77 AT4G15000 236 / 7e-82 Ribosomal L27e protein family (.1.2) Lus10039017 [exp] 205 / 3e-69 AT4G15000 232 / 3e-80 Ribosomal L27e protein family (.1.2) Lus10027314 [exp] 202 / 4e-68 AT4G15000 233 / 2e-80 Ribosomal L27e protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G021500 [exp] 206 / 1e-69 AT4G15000 205 / 2e-69 Ribosomal L27e protein family (.1.2) Potri.016G019000 [exp] 202 / 3e-68 AT4G15000 209 / 5e-71 Ribosomal L27e protein family (.1.2) Potri.001G342500 [exp] 199 / 3e-67 AT4G15000 210 / 2e-71 Ribosomal L27e protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01777 [flax] [poplar] Ribosomal_L27e Ribosomal L27e protein family CL0107 [flax] [poplar] KOW PF00467 [flax] [poplar] KOW KOW motif
Representative CDS sequence Show only first row Show all	>Lus10003814 pacid=23145974 polypeptide=Lus10003814 locus=Lus10003814.g ID=Lus10003814.BGIv1.0 annot-version=v1.0 ATGGTGAAGTTCCTGAAGCCGAACAAGGCCGTGATCGTCCTCCAGGGCCGTTACGCCGGGCGCAAGGCCGTCATTGTCAAGAACTTCGACGACGGCACCA AGGACCGCGGCTACGGCCACTGCTTGGTCGCCGGAATCAAGAAGTACCCCGGCAAGGTCATCAGGAAGGATTCGGCCAAGAAGACCGCTAAGAAGTCTCG CGTCAAGTGCTTCGTCAAGCTCGTCAACTACAGGCATCTGATGCCGACTCGCTACACGCTGGACGTGGACTTGAAGGATGTTGTTACTCCCGATGTGTTG CAGAGCAAGGAGAAGAAGGTCGCCGCTTCTAAGGAGGCCAAGGCGAAGTTTGAGGAGAGGTTCAAGACTGGGAAGAACAGGTGGTTCTTTACCAAGCTCA GGTTTTAA
AA sequence Show only first row Show all	>Lus10003814 pacid=23145974 polypeptide=Lus10003814 locus=Lus10003814.g ID=Lus10003814.BGIv1.0 annot-version=v1.0 MVKFLKPNKAVIVLQGRYAGRKAVIVKNFDDGTKDRGYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKCFVKLVNYRHLMPTRYTLDVDLKDVVTPDVL QSKEKKVAASKEAKAKFEERFKTGKNRWFFTKLRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15000			Ribosomal L27e protein family ...		Lus10003814 [exp]	0	1
AT5G09510			Ribosomal protein S19 family p...		Lus10033856 [exp]	3.7	0.9488
AT2G09990			Ribosomal protein S5 domain 2-...		Lus10035133 [exp]	5.5	0.9443
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10021027 [exp]	6.6	0.9044
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10028965 [exp]	8.0	0.9426
AT5G35530			Ribosomal protein S3 family pr...		Lus10030503 [exp]	8.6	0.9460
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10002851 [exp]	9.7	0.9419
AT5G59850			Ribosomal protein S8 family pr...		Lus10023429 [exp]	10.4	0.9270
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10023548 [exp]	13.1	0.8958
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10022551 [exp]	14.8	0.9243
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10017648 [exp]	15.5	0.9371

Compare expression of checked genes

Lus10003814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.