Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22260 287 / 6e-99 Cysteine proteinases superfamily protein (.1.2.3) AT3G02070 235 / 9e-79 Cysteine proteinases superfamily protein (.1) AT5G03330 185 / 2e-57 Cysteine proteinases superfamily protein (.1.2) AT5G04250 185 / 3e-57 Cysteine proteinases superfamily protein (.1.2) AT2G39320 76 / 4e-17 Cysteine proteinases superfamily protein (.1) AT5G67170 56 / 6e-09 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT2G27350 47 / 5e-06 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010459 [exp] 372 / 2e-132 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3) Lus10027312 [exp] 295 / 4e-101 AT3G22260 303 / 3e-104 Cysteine proteinases superfamily protein (.1.2.3) Lus10038708 [exp] 187 / 7e-58 AT5G04250 367 / 2e-126 Cysteine proteinases superfamily protein (.1.2) Lus10037977 [exp] 184 / 1e-56 AT5G04250 361 / 5e-124 Cysteine proteinases superfamily protein (.1.2) Lus10026525 [exp] 179 / 3e-55 AT5G03330 292 / 4e-97 Cysteine proteinases superfamily protein (.1.2) Lus10001404 [exp] 173 / 9e-53 AT5G03330 327 / 9e-111 Cysteine proteinases superfamily protein (.1.2) Lus10023019 [exp] 173 / 1e-52 AT5G03330 325 / 4e-110 Cysteine proteinases superfamily protein (.1.2) Lus10013813 [exp] 171 / 6e-52 AT5G03330 280 / 2e-92 Cysteine proteinases superfamily protein (.1.2) Lus10037388 [exp] 158 / 3e-47 AT5G04250 239 / 6e-77 Cysteine proteinases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G021700 [exp] 318 / 3e-111 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.016G019700 [exp] 300 / 4e-104 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3) Potri.014G140200 [exp] 247 / 3e-83 AT3G02070 358 / 2e-127 Cysteine proteinases superfamily protein (.1) Potri.006G125900 [exp] 190 / 3e-59 AT5G03330 329 / 1e-111 Cysteine proteinases superfamily protein (.1.2) Potri.016G094700 [exp] 189 / 4e-59 AT5G03330 316 / 9e-107 Cysteine proteinases superfamily protein (.1.2) Potri.010G225400 [exp] 184 / 1e-56 AT5G04250 360 / 2e-123 Cysteine proteinases superfamily protein (.1.2) Potri.008G036700 [exp] 178 / 2e-54 AT5G04250 372 / 2e-128 Cysteine proteinases superfamily protein (.1.2) Potri.008G036900 [exp] 155 / 7e-48 AT5G04250 239 / 4e-79 Cysteine proteinases superfamily protein (.1.2) Potri.005G140500 [exp] 59 / 3e-10 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.009G160100 [exp] 44 / 5e-05 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10003816 pacid=23145968 polypeptide=Lus10003816 locus=Lus10003816.g ID=Lus10003816.BGIv1.0 annot-version=v1.0 ATGACCGAAAGCCACAGCAACGCGAGTGCAAGCTCGACTTCTAGTTTTAGTAGCAGCACTGCTGATACAGAGGATGATCAAGTCATTGCAAGCATCTTAG CTGAAGAAGAAAAGGCTAACGCTGGTAGACAGCTTGGAAAGAGGCTCTCTCATTTAGATTCTATACCTCACACTCTTCGCGTTAATGGCGAGATTCCAGA TTTGAACGACGCAACCTTAGATCATGTACGGCTTTCTGAAAGAGTAGTCCATAACTCGTGCCTTCTTGTTCAAGTTATCAAATTTCGAGCACTGGCAGAC CAGTTGTTCCGCAGTCCAGATTATCACAAACATGTCAGGAAGCAAGTGGTGAAGCAGCTAAAGCAATTCAGAAAGTTTTACGAAAGCCATGTCCCGATGA AGTACAAAAGCTACATTAGAAAGATGAAAAAATCAGGAGAGTGGGGTGATCACGTCACTCTACAAGCTGCTGCAGATCGATTTGAAGCCAAGATTTGCTT AGTTACATCTTTTCGCGACACTTGCTACATCGAGATCCGGCCCAAGGACAAGCCTCCCGGGAGAGAGATCTGGCTAAGCTTTTGGAGTGAAGTTCACTAT AATTCACTATATGCAATTGGAGATGTTCCCACCAGAGTACCAAGGAAAAGGCATTGGCTCTTCTGA
AA sequence Show only first row Show all	>Lus10003816 pacid=23145968 polypeptide=Lus10003816 locus=Lus10003816.g ID=Lus10003816.BGIv1.0 annot-version=v1.0 MTESHSNASASSTSSFSSSTADTEDDQVIASILAEEEKANAGRQLGKRLSHLDSIPHTLRVNGEIPDLNDATLDHVRLSERVVHNSCLLVQVIKFRALAD QLFRSPDYHKHVRKQVVKQLKQFRKFYESHVPMKYKSYIRKMKKSGEWGDHVTLQAAADRFEAKICLVTSFRDTCYIEIRPKDKPPGREIWLSFWSEVHY NSLYAIGDVPTRVPRKRHWLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22260			Cysteine proteinases superfami...		Lus10003816 [exp]	0	1
AT5G03330			Cysteine proteinases superfami...		Lus10026525 [exp]	4.2	0.9452
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	5.5	0.9594
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10020902 [exp]	7.7	0.9406
AT4G34030		MCCB	3-methylcrotonyl-CoA carboxyla...		Lus10014068 [exp]	8.1	0.9500
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10028782 [exp]	10.6	0.9325
AT2G17080			Arabidopsis protein of unknown...		Lus10025124 [exp]	11.1	0.9446
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	13.8	0.9433
AT3G04970			DHHC-type zinc finger family p...		Lus10018967 [exp]	14.1	0.9408
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	14.1	0.9416
AT4G35110			Arabidopsis phospholipase-like...		Lus10042396 [exp]	15.0	0.9374

Compare expression of checked genes

Lus10003816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.