Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003818 pacid=23145955 polypeptide=Lus10003818 locus=Lus10003818.g ID=Lus10003818.BGIv1.0 annot-version=v1.0 ATGTCTTTTCCCGCCCCGTTTGAAATTCCACGAGAAGTGATCCGATTCAGTTCGGAACAAACAAATCTCTCCCTCGAAATCCCTATCGGAATATCAGAAT TTTGCTCTTCCTCTCCCCTCCCGCCAACTCTGCGACCTCTGGAGCCTGAACTCGCAGCAGAGAACAATGATGGATCCACGGATAGTCGGATACTGTCTCC TGATGTCGCTGTTGCAGCTGGAAGAGATCGTCAAAAGAGAGTTTATGCTACCGAACCATCCAGGGAACTCTATCATATGGATCCAGCCGGTGGATATCCT GTCATTCAACAAGGATGGAGTCCCAATCAGATTGACGATGAAGTCACTTTGTGA
AA sequence Show only first row Show all	>Lus10003818 pacid=23145955 polypeptide=Lus10003818 locus=Lus10003818.g ID=Lus10003818.BGIv1.0 annot-version=v1.0 MSFPAPFEIPREVIRFSSEQTNLSLEIPIGISEFCSSSPLPPTLRPLEPELAAENNDGSTDSRILSPDVAVAAGRDRQKRVYATEPSRELYHMDPAGGYP VIQQGWSPNQIDDEVTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003818 [exp]	0	1
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10029847 [exp]	7.1	0.6422
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039557 [exp]	22.5	0.6217
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10007013 [exp]	38.7	0.5812
					Lus10017627 [exp]	71.0	0.5262
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Lus10019063 [exp]	75.2	0.5189
AT1G66300			F-box/RNI-like/FBD-like domain...		Lus10023040 [exp]	77.3	0.5313
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10027216 [exp]	78.5	0.5246
					Lus10009493 [exp]	121.7	0.5298

Compare expression of checked genes

Lus10003818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.