Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56960 1098 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G41210 1090 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G07960 960 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G77740 723 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT1G21980 667 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT3G09920 548 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT2G26420 446 / 4e-146 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G60890 361 / 8e-113 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 357 / 1e-111 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT4G01190 224 / 1e-65 ATPIPK10 phosphatidylinositol phosphate kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010458 [exp] 1508 / 0 AT3G56960 1147 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10027306 [exp] 1283 / 0 AT3G56960 1185 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10039011 [exp] 1273 / 0 AT3G56960 1174 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Lus10002734 [exp] 900 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10008651 [exp] 900 / 0 AT3G07960 990 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10039507 [exp] 810 / 0 AT3G07960 942 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10024151 [exp] 808 / 0 AT3G07960 918 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10018200 [exp] 715 / 0 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 714 / 0 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G036800 [exp] 1156 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.003G196000 [exp] 958 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G027900 [exp] 952 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.005G172800 [exp] 725 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 712 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 638 / 0 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.004G139900 [exp] 632 / 0 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.006G121200 [exp] 517 / 4e-172 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.001G211200 [exp] 359 / 7e-112 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 340 / 1e-104 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10003819 pacid=23145961 polypeptide=Lus10003819 locus=Lus10003819.g ID=Lus10003819.BGIv1.0 annot-version=v1.0 ATGAGCAAAGATTCACAGGGTGGTGGGGTGTTGAAGGCATGGGAAGCAACACTGAAGAAAACCCACGCCGCTAAGAAGCGTGCCACCAACAGCATCTTCG GCACCATCTCCTTAGCCAGCATGACGACCAACGACGACAACGGCGAGAACAACAACAACGAGAACAACAACAACGAGGACAACGACAACGATAACGACAA TGAAGACGACAGCAGCAGCACTAGCGGGGCGACAGAGTGTTACTACGCGGAGAAAGTGTTACCAAACGGCGATTACTACACAGGGCAATGGTACGACAAT TTCCCGAGCGGGAGAGGCAAGTATCTGTGGAACGACGGGTGCATGTACGTGGGAGAGTGGTACAAGGGGAAGACGATGGGGAGAGGGAGGTTCAGCTGGC CGTCTGGGGCGGTCTACGAAGGGGAGTTCAAGAGTGGGTATATGGATGGGAATGGGACCTACTCGGCGGTCAATGGAAATGTTTATAGAGGCCAGTGGGT TATGAATCTCAAGCATGGCCATGGCATGAAGCAGTTTGCAAAGGGTGATTGGTACGAAGGTGATTGGAGACGAGGCTTACAAGAAGGGCAAGGAAAATAC CAATGGAAAGCACCGGCCAACTACTACGTCGGCGAGTGGAAGAACGGCACCATCTGCGGCAAAGGCACGTTCATGTGGGAGAACGGAACTCGCTACGACG GCCAGTGGGAAGACGGCGTACCAAAAGGTAACGGCACGTTCACCTGGCCAGACGGCAGCTTCTACGTAGGCAACTGGAGCAAAGACCCCGCGGAGCAGAA CGGGAGCTACCACCCTTCCACGTCATCCTCCTCGTCAGCCAGCCAGCAGGATTGGGACCCACAGAGCGTGTACACCGTGTACCTCGCCGACTGCCAGATA TGCCCCTGCGAGAAGGTGTCCATCCTGCCGTCGCAGAAGAAGCTGGCCATGTGGAACTCGTCAAAGCACAGCGCCGACAAGGGGCGGCGGCTGTCAGTTG ACGGCAGGGCCAGCGTCGGGAACGAGAGGGCGTTCGAGAGGATGAACATGTGGGGCGACGGAGATCATGATTCAGGCCGCAGAGGCTCCGCCGTGATGGA TATGGATGCGGAGTTGTTGGGGATGGATCAGACGTCGGCGGAGGAATTAGGGAATATGAATTATGCTGCGAGTCTAAATAAAGGGCTGCCTATGAAAGTG CCTAAAGTTGCTAAACGACAAGGGGAGACCATTTGTAAAGGGCATAAGAACTACGAGCTTATGCTTAATCTACAGCTAGGAATCAGGCACTCAGTTGGAC GACCGGGACCAGCAGCATCACTTGATCTAAAAGCATCAGCTTTCGACCCAAACGAGAAGATATGGACAAGATTCCCACCCGAAGGAAGTAAGCACACCCC ACCCCACGGTTCTTCCGAGTTCAAGTGGAAAGACTACTGCCCCTTAGTTTTCAGGTCGTTAAGAAAGTTGTTTAAAGTTGACCCGGCTGACTACATGTTG TCGATATGTGGGGATGAGGCGCTCCGTGAGCTCTCGTCTCCAGGAAAGAGTGGTAGTTTCTTTTACTTGACTAACGATGATCGATATATGATCAAGACGA TGAAGAAATCAGAAGTCAAAGTGCTTATAAGGATGCTTGCAGCCTATTACAATCATTTCAGATCCTATGAGAACACCTTAATCATCAAATTTTTTGGCTT ACATTGTGTGAAATTAGCTGGACCTGCACAAAAGAAGGTACGGTTCATAATAATGGGAAACCTGTTTGTTTCGGAGTACGCAATCCACAGACGGTTCGAC CTAAAGGGTTCGTCATTGGGTCGGATCACAGACAAGCCAGAGTCCGAGATCGACTCCAACACCATTCTTAAAGACCTGGACTTGAACTTCATTTTCAAGT TACAGAAGGCTTGGTTTCAAGAATTTTGCAGGCAAGTAGATAGAGACTGCGAGCTGCTTGAGCAGGAGAGGATTATGGACTACAGTCTTCTAGTCGGCAT ACATTTCAAAGAAGTATCGCCCAATCAGGAAATCATTCCCTGTAAAGCCGAACCTCCTTCTGCTGAAGTTGAAACGGAAGATGGACCTCGACTTTCTAGA GCAGACATGGATCAACTTCAGCTAGACCCAACCAAATGGGCACGCATCAGGTTAGGAATGAACATGCCAGCAAGAGTCGAAAGAACAATGAGGAATAACG AGTGTGAACTTCAACTGGTTGGAGAGCCAACCGGGGAGTTCTACGAAATCGTAGTGACATTCGGTATTATCGACATTCTTCAAGACTATGACATTAGCAA GAAGCTGGAGCATGCTTATAAATCCATCCAATACGACCCTACTTCTATCTCGGCCGTTGATCCTAAGCAATATTCGAGGAGATTCAGAGACTTCATTTTC AGAATCTTTGCAGAAGATTCGTAG
AA sequence Show only first row Show all	>Lus10003819 pacid=23145961 polypeptide=Lus10003819 locus=Lus10003819.g ID=Lus10003819.BGIv1.0 annot-version=v1.0 MSKDSQGGGVLKAWEATLKKTHAAKKRATNSIFGTISLASMTTNDDNGENNNNENNNNEDNDNDNDNEDDSSSTSGATECYYAEKVLPNGDYYTGQWYDN FPSGRGKYLWNDGCMYVGEWYKGKTMGRGRFSWPSGAVYEGEFKSGYMDGNGTYSAVNGNVYRGQWVMNLKHGHGMKQFAKGDWYEGDWRRGLQEGQGKY QWKAPANYYVGEWKNGTICGKGTFMWENGTRYDGQWEDGVPKGNGTFTWPDGSFYVGNWSKDPAEQNGSYHPSTSSSSSASQQDWDPQSVYTVYLADCQI CPCEKVSILPSQKKLAMWNSSKHSADKGRRLSVDGRASVGNERAFERMNMWGDGDHDSGRRGSAVMDMDAELLGMDQTSAEELGNMNYAASLNKGLPMKV PKVAKRQGETICKGHKNYELMLNLQLGIRHSVGRPGPAASLDLKASAFDPNEKIWTRFPPEGSKHTPPHGSSEFKWKDYCPLVFRSLRKLFKVDPADYML SICGDEALRELSSPGKSGSFFYLTNDDRYMIKTMKKSEVKVLIRMLAAYYNHFRSYENTLIIKFFGLHCVKLAGPAQKKVRFIIMGNLFVSEYAIHRRFD LKGSSLGRITDKPESEIDSNTILKDLDLNFIFKLQKAWFQEFCRQVDRDCELLEQERIMDYSLLVGIHFKEVSPNQEIIPCKAEPPSAEVETEDGPRLSR ADMDQLQLDPTKWARIRLGMNMPARVERTMRNNECELQLVGEPTGEFYEIVVTFGIIDILQDYDISKKLEHAYKSIQYDPTSISAVDPKQYSRRFRDFIF RIFAEDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10003819 [exp]	0	1
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10041548 [exp]	3.2	0.8451
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10014347 [exp]	3.5	0.8708
AT3G19270		CYP707A4	"cytochrome P450, family 707, ...		Lus10021725 [exp]	4.9	0.8827
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10029865 [exp]	12.0	0.8473
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10018354 [exp]	12.1	0.8383
AT2G29630		PY, THIC	PYRIMIDINE REQUIRING, thiaminC...		Lus10040694 [exp]	13.2	0.8482
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10032798 [exp]	14.4	0.8171
					Lus10008674 [exp]	15.0	0.8296
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10028480 [exp]	15.7	0.8435
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10025016 [exp]	16.0	0.8369

Compare expression of checked genes

Lus10003819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.