Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04140 1392 / 0 GLS1, GLUS, GLU1, FD-GOGAT FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) AT2G41220 1390 / 0 GLU2 glutamate synthase 2 (.1) AT5G53460 1037 / 0 GLT1 NADH-dependent glutamate synthase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010457 [exp] 1615 / 0 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10000390 [exp] 616 / 0 AT5G53460 3795 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10019021 [exp] 613 / 0 AT5G53460 1273 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Lus10019020 [exp] 210 / 7e-56 AT5G53460 1280 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G038400 [exp] 1440 / 0 AT5G04140 2831 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Potri.016G036900 [exp] 1433 / 0 AT5G04140 2813 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Potri.012G011700 [exp] 625 / 0 AT5G53460 3649 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3) Potri.015G017500 [exp] 618 / 0 AT5G53460 3665 / 0.0 NADH-dependent glutamate synthase 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01645 [flax] [poplar] Glu_synthase Conserved region in glutamate synthase CL0036 [flax] [poplar] TIM_barrel PF04898 [flax] [poplar] Glu_syn_central Glutamate synthase central domain CL0036 [flax] [poplar] PF01493 [flax] [poplar] GXGXG GXGXG motif CL0052 [flax] [poplar] NTN PF00310 [flax] [poplar] GATase_2 Glutamine amidotransferases class-II
Representative CDS sequence Show only first row Show all	>Lus10003820 pacid=23145952 polypeptide=Lus10003820 locus=Lus10003820.g ID=Lus10003820.BGIv1.0 annot-version=v1.0 ATGGCTCTTCATCATTCCTCGCTCTCTCCTTTCCCTGCTACAACAACCACCGCTCGCCGCCGCCATGATCTCCCACCCAACACTCAGCGCCGCCTCCTGT TCGTCGATTTCGTCGGACTCTGCGGCCAATCGAGACGCGGTATCACCCGCAGGACAGTTCTTCCTGCTGCTTCCTCCTCATCATCCTCCTCTTTTCATCA TCATCCGACGACGACGACTTTTTCTCGACTAGCGAATAGCAAGTCTTCTTCGTCGTGGTCCGTCGGAGCCAGCCGCGGAGTTGACTGTGGTAGCACTAGT AGTAGTAGTGGAAGCAGTCTTGTCACTGAGAGTGTGGCGGTTGGTGGCTCTGCTTCTCGTAGCTCCGATTTGAAGCCTCAGGTGGCAAACTTGAGTGACA TACTATCTGAGAGAGGAGCCTGTGGAGTTGGGTTCATTGCTAACTTGGAAAATAAAGCATCAAATAAGATCATTAAGGATGCTCTTAATGCTCTTGGATG CATGGAACATCGTGGAGGGTGTGGAGCAGATAATGACTCAGGTGATGGATCAGGATTGATGACTTCGCTTCCATGGGATCTATTCAACAAATGGGCCGAA GAGCAAGGGCTTGCTTCCTTCGATAAGTTGCATACTGGTGTTGGGATGGTTTTTCTTCCACAAGATGATGACCTTATGAAAGAAGCCAAACAAGTTGTTG TAAATATTTTTCAACAAGAGGGCCTTGAGGTGCTCGGTTGGAGGACTGTTCCTGTAAATACATCCGTAGTTGGCTTCTATGCCAAAGAAACCATGCCCAG CATTCAACAGGTATTTGTTAAAGTTGTGAAAGAAGAGAGCGTTGGTGACATTGAACGAGAGCTTTACATATGCCGGAAGTTGATAGAGAGAGTTGCAAGC TCAGAAAGTTGGGGAAATGAGCTCTACTTCTGCTCTTTATCCAACCAAACAATTGTCTATAAGGGAATGCTTCGTTCTGCAGTTCTTGGATTGTTTTATT CTGATCTTCAGAATGATCTCTATACATCACCGTTTGCTATTTATCATCGACGGTTTAGTACAAATACCAGTCCTAGGTGGCCTCTGGCTCAACCAATGCG ATTCCTTGGTCATAATGGAGAAATTAATACCATTCAGGGTAACTTGAACTGGATGCAATCTCGAGAAACCTCTCTAAAGTCTCCAGTATGGCGTGGCCGT GAAAATGAAATTCGTCCATTTGGTAACCCAAAGGCATCAGACTCGGCCAATCTTGATAGCGCAGCAGAACTTTTGATAAGAAGTGGACGTACCCCTGAGG AGACACTGATGATTCTTGTCCCTGAGGCATACAAGAATCACCCAACTCTGACGATTAAGTACCCTGAGGCGATTGATTTCTATGACTATTACAAGGGCCA GATGGAAGCTTGGGATGGGCCTGCGTTGCTATTGTTCAGTGATGGAAACACTGTTGGAGCCTGCCTCGATCGAAATGGACTTCGGCCAGCTAGGTATTGG AAAACAAGTGACAACTTCGTCTATGTTGCATCTGAGGTTGGTGTTGTGCCCATGGATGAATCAAAAGTAATAATGAAAGGCCGTCTTGGTCCAGGGATGA TGATAGCTGTCGATTTGCTCGGTGGTCAGGTTTATGAGAATACTGAAGTGAAAAGAAAAGTAGCTTCATCAAATCCATATGGTAAATGGCTTAGTGAAAA CATGCGAGCCTTGAAACCTAAAAAGTTCATCTCATCAGCAGTTATGGAGACCGAGACAATTTTAAGGAACCAACAGGCATATGGGTACTCTAGTGAGGAT GTGCAAATGGTTATTGAGAGTATGGCATCACAAGGTAAGGAGCCAACATTTTGCATGGGGGATGACATTCCACTGGCAGTGTTATCCCAAAGGCCGCACT TGCTGTATGATTATTTCAAGCAACGTTTTGCACAGGTAACAAATCCAGCTATTGACCCACTCAGAGAGGGTTTAGTTATGTCCCTGGAAGTCAATATTGG AAAGCGAGGAAACATACTCGAGGCTGGTCCGGAGAATGCTTCACAGATTACATTGTCCAATCCAGTTCTAAATGAAGGGGATCTTGAGTCATTGTTAGCT GACCCACAGTTAAAAACTCAAGTTTTACCAACCTTTTTCGATATACGTAAAGGCCTGGATGGCTCTTTGGAGAAAACACTTGGCAGGCTTTGCGATGCTG CTGATGAAGCTGTTCGCAATGGTGCTCAACTGCTTGTTCTTTCTGACCGAGCTGAGGAGCCTGAGGCAACTCGGCCTGCAATTCCTATTCTTCTTGCTGT TGGTGCTGTTCATCAACATCTCATTGAAAATGGCTTGCGAATGTCAACCTCCATAGTTGCAGATACTGCTCAATGCTTTAGCACTCATCATTTTGCCTGT CTGATAGGATATGGTGCAAGTGCTGTATGCCCGTATCTTGCCCTTGAAACATGTCGGCAATGGCGTTTGAGTAACAAGACTGTTAACTTGATGCGGAATG GAAAGATGCCTACTGTGACCATTGAACAAGCTCAAAATAACTTCTGCAAGGCTGTTAGATCTGGTCTCCTCAAGATTCTTTCAAAGATGGGCATATCATT GCTTTCAAGTTACTGTGGTGCACAGATATTTGAGATCTATGGACTGGGTAAGGAGGTCGTCGATCTTGCATTTCGTGGAAGTGTATCAACTATCGGTGGT CTGACATTCGATGAGGTTCTTCGTGATCTTTTCGAGTTTAAAAGTGATCGTGCTCCTATTCCTGTGGGAAAGGTTGAACCTGCTACTTCTATAGTCCAGC GCTTTTGCACCGGTGGGATGTCGCTTGGAGCTATCTCACGAGAAACACATGAAGCTATTGCCATAGCAATGAACAGAATTGGCGGGAAGTCCAATTCCGG TGAAGGTGGTGAGGATCCTATCAGATGGAATCCACTAACAGATGTTGTTGATGGATACTCGTCTACACTGCCTCATCTCAAAGGTCTTCAGAACGGAGAT ACCGCTACCAGTGCTATTAAACAGGTTGCTTCGGGACGTTTTGGCGTCACTCCGACTTTCTTGGTGAACGCTGATCAACTAGAGATAAAAATAGCACAAG GTGCCAAACCCGGAGAAGGAGGTCAGCTGCCAGGGCAGAAAGTCAGTGCATATATCGCGAGGTTGAGGAATTCTAAGCCTGGTGTTCCACTTATCTCCCC ACCACCCCACCATGATATTTATTCTATTGAGGATCTTGCCCAGTTGATCTTTGACCTTCATCAGGTCAACCCCAAGGCTAAGGTCTCTGTAAAGCTCGTT GCAGAAGCGGGTATTGGCACAGTTGCCTCTGGTGTTGCAAAGGCTAATGCTGATATTATTCAGATATCAGGGCATGATGGTGGGACGGGAGCTAGCCCCA TAAGTTCCATTAAGCATGCTGGCGGCCCATGGGAGCTTGGCCTCACGGAAACTCATCAGACCCTCATCGCAAATGGACTAAGAGAACGGGTAATTCTCAG AGTTGACGGTGGCTTCAAAAGTGGTTTCGATGTCATGATGGCCGCAGCAATGGGAGCCGATGAATATGGGTTCGGTTCTGTGGCAATGATTGCTACTGGG TGTGTTATGGCCCGTATCTGCCACACAAACAATTGCCCAGTTGGTGTTGCCAGTCAGAGGGAAGAACTCCGTGCTCGGTTCCCTGGTGTGCCAGCTGATC TGGTTAATTTCTTTCTGTACGTCGCAGAGGAGGTAAGAAGTGTGCTGGCAGAACTTGGTTACCAGAAGCTGGATGACATCATCGGGAAATCAGACATTTT AAGGCAGCGAGACATCTCCCTCGTGAAGACTCAGCATCTCGATCTAAGTTACCTGCTCTCGAATGTTGGAATGCCAAAATTGAGCAGTACAGAGATAAGG AACCAAGAAGTTCATACTAATGGTCTTATCTTGGATGACAAGATACTTGCAGATCCAGTGATTGCAGATGCTATCGAGAACGAGAAGGTCGTGGACAAGA CGGTCGACATATATAATGTAGACCGTGCCGTTTGTGGGCGCATAGCCGGTGCAATCGCAAAGAAGTATGGTGATACTGGTTTTGCTGGACAGCTGAACAT AACGTTTAACGGGAGTGCGGGTCAGTCATTTGGATGCTTTTTGACTCCTGGGATGAACGTCCGGCTCGTAGGAGAGGCAAACGATTACGTTGGAAAGGGT ATGGCCGGAGGAGAGCTGGTTGTCACTCCATTGGAAAACGTAGGGTTCGTCCCTGAGAATGCAGCCATAGTAGGAAACACCTGCCTTTACGGAGCCACAG GTGGACAAGTCTTCGTTCGAGGCCAAGCTGGCGAGCGGTTCGCTGTTAGAAACTCGCTCGGTGAGGCTGTTGTCGAAGGCACTGGCGACCATTGCTGCGA GTACATGACCGGTGGCTGTGTGGTCGTCATTGGAAAAGTTGGACGAAATGTAGCTGCTGGAATGACGGGAGGATTGGCGTACATCCTTGACGAGGATGAT ACCTTGATTCCCAAGGTAAATAAGGAAATAGTGAAGGTCCAGAGAGTGACTGCTCCAGCTGGTCAAATGCAGCTCAAATCCCTCATTGAAGCCCACGTTG AGAAGACAGGGAGTGGGAAAGGAGCAGCTATACTAAAGGAGTGGGAGAGATTCCTGCCTCTCTTCTGGCAACTTGTCCCTCCCAGCGAAGAGGATACCCC TGAGGCCAGTGCCGAGTACGAGGCCGCATCCGCCGGAGAAGTCATCGTCCGGTCTGCTTAA
AA sequence Show only first row Show all	>Lus10003820 pacid=23145952 polypeptide=Lus10003820 locus=Lus10003820.g ID=Lus10003820.BGIv1.0 annot-version=v1.0 MALHHSSLSPFPATTTTARRRHDLPPNTQRRLLFVDFVGLCGQSRRGITRRTVLPAASSSSSSSFHHHPTTTTFSRLANSKSSSSWSVGASRGVDCGSTS SSSGSSLVTESVAVGGSASRSSDLKPQVANLSDILSERGACGVGFIANLENKASNKIIKDALNALGCMEHRGGCGADNDSGDGSGLMTSLPWDLFNKWAE EQGLASFDKLHTGVGMVFLPQDDDLMKEAKQVVVNIFQQEGLEVLGWRTVPVNTSVVGFYAKETMPSIQQVFVKVVKEESVGDIERELYICRKLIERVAS SESWGNELYFCSLSNQTIVYKGMLRSAVLGLFYSDLQNDLYTSPFAIYHRRFSTNTSPRWPLAQPMRFLGHNGEINTIQGNLNWMQSRETSLKSPVWRGR ENEIRPFGNPKASDSANLDSAAELLIRSGRTPEETLMILVPEAYKNHPTLTIKYPEAIDFYDYYKGQMEAWDGPALLLFSDGNTVGACLDRNGLRPARYW KTSDNFVYVASEVGVVPMDESKVIMKGRLGPGMMIAVDLLGGQVYENTEVKRKVASSNPYGKWLSENMRALKPKKFISSAVMETETILRNQQAYGYSSED VQMVIESMASQGKEPTFCMGDDIPLAVLSQRPHLLYDYFKQRFAQVTNPAIDPLREGLVMSLEVNIGKRGNILEAGPENASQITLSNPVLNEGDLESLLA DPQLKTQVLPTFFDIRKGLDGSLEKTLGRLCDAADEAVRNGAQLLVLSDRAEEPEATRPAIPILLAVGAVHQHLIENGLRMSTSIVADTAQCFSTHHFAC LIGYGASAVCPYLALETCRQWRLSNKTVNLMRNGKMPTVTIEQAQNNFCKAVRSGLLKILSKMGISLLSSYCGAQIFEIYGLGKEVVDLAFRGSVSTIGG LTFDEVLRDLFEFKSDRAPIPVGKVEPATSIVQRFCTGGMSLGAISRETHEAIAIAMNRIGGKSNSGEGGEDPIRWNPLTDVVDGYSSTLPHLKGLQNGD TATSAIKQVASGRFGVTPTFLVNADQLEIKIAQGAKPGEGGQLPGQKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQLIFDLHQVNPKAKVSVKLV AEAGIGTVASGVAKANADIIQISGHDGGTGASPISSIKHAGGPWELGLTETHQTLIANGLRERVILRVDGGFKSGFDVMMAAAMGADEYGFGSVAMIATG CVMARICHTNNCPVGVASQREELRARFPGVPADLVNFFLYVAEEVRSVLAELGYQKLDDIIGKSDILRQRDISLVKTQHLDLSYLLSNVGMPKLSSTEIR NQEVHTNGLILDDKILADPVIADAIENEKVVDKTVDIYNVDRAVCGRIAGAIAKKYGDTGFAGQLNITFNGSAGQSFGCFLTPGMNVRLVGEANDYVGKG MAGGELVVTPLENVGFVPENAAIVGNTCLYGATGGQVFVRGQAGERFAVRNSLGEAVVEGTGDHCCEYMTGGCVVVIGKVGRNVAAGMTGGLAYILDEDD TLIPKVNKEIVKVQRVTAPAGQMQLKSLIEAHVEKTGSGKGAAILKEWERFLPLFWQLVPPSEEDTPEASAEYEAASAGEVIVRSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41220		GLU2	glutamate synthase 2 (.1)		Lus10003820 [exp]	0	1
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Lus10010457 [exp]	1.0	0.9411
AT4G31390			Protein kinase superfamily pro...		Lus10020152 [exp]	2.6	0.8795
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	3.5	0.9111
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10019877 [exp]	4.5	0.9030
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036542 [exp]	4.9	0.8756
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	5.5	0.9077
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10041275 [exp]	5.5	0.8937
AT5G35970			P-loop containing nucleoside t...		Lus10024975 [exp]	9.4	0.8714
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10019508 [exp]	11.7	0.8829
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10014382 [exp]	16.2	0.8703

Compare expression of checked genes

Lus10003820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.