Plant FIBer expression Database

Lus10003821 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G14680 505 / 8e-172 MEE13 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010456
[exp]
1109 / 0 AT2G14680 576 / 0.0 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G087100
[exp]
633 / 0 AT2G14680 608 / 0.0 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
Potri.001G292800
[exp]
629 / 0 AT2G14680 607 / 0.0 maternal effect embryo arrest 13, myosin heavy chain-related (.1.2.3)
PFAM info
Representative CDS sequence
>Lus10003821 pacid=23145965 polypeptide=Lus10003821 locus=Lus10003821.g ID=Lus10003821.BGIv1.0 annot-version=v1.0
ATGTGGGGTTTGAATGGGATTTTCGATTCGGCTGTTATTGCTGTTTGCCCCCCACCCCCCCCAGCTGTTTCTAACTGTTTGAATGATTTTGCAGATATGG
AGACAAATGCTGCTAATGATGAATCATTGAAGGCTCGCATCCAGCAGTTGGAATATGAGCGCGACGAACTACTCAGAGAGCGCAACGAATTGCACAAAGA
TATAGAACTGTTATGCATGCAGCAAGCCGGGCCTGGCTTTCTCACTGTTGCAACTCGCTTGCACTTTCAGAGGACAGCTGGCTTGGAGCAGGAAATCGAG
AATTTGAAAACAAAGTTAGCTGCCTCTACAAGAGATCATCTTAATCTTCAAGAAGAGCTTTCAGAGGCATTCCGAATTAAAGCGCAATTGGCAGAGCTAC
ATCAAGCAGAAGTCGCAAAGAATATTGAAGCAGAGAAACAGGTCAAATTTTTCCAAGGATGCGTAGCTGCTGCTTTTGCAGAACGTGATCAGGCCATTCT
AGAGGCTGAAAAAGCTAAGGAGGAAGAGGAGCTCGTATCACAGAAGTTCTTGCCAGTGCAGACTAGGTTGGAAGAGCTGACTTCAGATCTGCTTCAGCAG
AAGAGACGGAACGATGAATTGCTGCTTGATCTATCGAAGCAAGAACAACAGAATGAAAACTTCAAAAAGGTTGTGGATAAGTTCTTTGCGATTAGGCAGC
AATCGTCTGAGGGATCTTCCGAGACAAGTTGGGATGATAAGTGTGAATGTCTAATACACGAACCAGCTGAAGTGTGGAGTTATAATGATCCTTCAAGCTC
TGATTACGTTAGTGCGTTGGAGGGCGAGCTGGAGAAATCGAGGAAATATGTCGATGATCTTCGAAACAAACTGCAAATGGGTATGGAAATAGAGAAACAC
TTGGGAAAGAAAGTTCGTGAAGTCGAAAAGAACCAAATTCGTTTTGACAAAGTGGTCATGAGTGGGATGTTGGAGTTGCGCAACTGTCATTCTCAGCATA
GACTTGAGATTCTAAATTTACTTTCAGAAGAAAAATCTCAGCTCAAGTTGTTGGTTGATTTGATTGAAGAGAAGATCAAAGGATTCGACTTGGCAAAACA
GAATCTCGAAGTTCCTGAGGTCCTAACAAGCTCAGATGAAACTGAATGTCGCAATGTGCATGTTGTGACTGACAGTTCATCAGCATCCGAGAAAATTGAG
AGTTGCTCGTCATATAATGAAGCGCCTTCCGAAGAAGGCTATGCTTCCGTAGCCCTGAGGCAAGCATTGCAAGAAAAGGTTTCAACGCTATTGCTTTTGT
CTCAGCAAGAAGAGAGACATTTACTGGAAAGGAATGTGAATGGAGCTCTTCAGAGAAAGATTGATGAACTTCAAAGAAACTTACTCCAAGTTAGTCATGA
GAAGGTTAAAGCTCTTATGGAGTTGGCACAGTTGAAACAAGAGCATCAACTTCTCCAAGAAAAACTAGCTGATGAAGCAAACCGAGGGCGAACCAATCAT
GAAAGAGATGTAGGGGTGAAAAATGTGCTAAAGAAAACTTATCTGAGACGTTGGCTTGGCACGCTGGATACGAGTAGAACCGAAGTCGATCCGAGTAACA
AAGGGGATCGAAAGTCGAACTCGATGGATTTCGCCAGAATGAAGATTGAAACAGCTACTCTTAGGGAAAGCATGGAGAGTATGGAACACTTGGTTATCTC
GACTCGCAGGCTTCGCCTCACACTTGTCAAGATCAGTGAATCGCTGGCCAACGAAAACCCTGAAACCGGGATGTCTGGAGCTTTGGATAACATCATTCAG
GAAGCTAAGCTAGTGAAAACCGCGCTTGGGAGCTCGTTACCGATCAGTTGGTCAGCAGGCACGGATTCCGCACCAGGCAGCCCGAGATTTTCTGGTCAGC
AAACGAGCCATTCGGATGCTACCGCAGATGAAAAAATGGATCCGGTATCTGCAGCCGGGTTCGAGATGGTTGAGCTTCTGATTCTTGCTGCTCATGCTCT
GAAAGAGAAATCAGCACCAGCAAATGTTGAGAAATTATAA
AA sequence
>Lus10003821 pacid=23145965 polypeptide=Lus10003821 locus=Lus10003821.g ID=Lus10003821.BGIv1.0 annot-version=v1.0
MWGLNGIFDSAVIAVCPPPPPAVSNCLNDFADMETNAANDESLKARIQQLEYERDELLRERNELHKDIELLCMQQAGPGFLTVATRLHFQRTAGLEQEIE
NLKTKLAASTRDHLNLQEELSEAFRIKAQLAELHQAEVAKNIEAEKQVKFFQGCVAAAFAERDQAILEAEKAKEEEELVSQKFLPVQTRLEELTSDLLQQ
KRRNDELLLDLSKQEQQNENFKKVVDKFFAIRQQSSEGSSETSWDDKCECLIHEPAEVWSYNDPSSSDYVSALEGELEKSRKYVDDLRNKLQMGMEIEKH
LGKKVREVEKNQIRFDKVVMSGMLELRNCHSQHRLEILNLLSEEKSQLKLLVDLIEEKIKGFDLAKQNLEVPEVLTSSDETECRNVHVVTDSSSASEKIE
SCSSYNEAPSEEGYASVALRQALQEKVSTLLLLSQQEERHLLERNVNGALQRKIDELQRNLLQVSHEKVKALMELAQLKQEHQLLQEKLADEANRGRTNH
ERDVGVKNVLKKTYLRRWLGTLDTSRTEVDPSNKGDRKSNSMDFARMKIETATLRESMESMEHLVISTRRLRLTLVKISESLANENPETGMSGALDNIIQ
EAKLVKTALGSSLPISWSAGTDSAPGSPRFSGQQTSHSDATADEKMDPVSAAGFEMVELLILAAHALKEKSAPANVEKL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G14680 MEE13 maternal effect embryo arrest ... Lus10003821
[exp]
0 1
AT1G13450 Trihelix GT-1 GT-1, Homeodomain-like superfa... Lus10015824
[exp]
1.0 0.9723
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Lus10019458
[exp]
2.0 0.9663
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Lus10043309
[exp]
3.2 0.9629
AT1G21000 PLATZ transcription factor fam... Lus10002700
[exp]
6.9 0.9654
AT4G19160 unknown protein Lus10038244
[exp]
7.3 0.9565
AT3G04970 DHHC-type zinc finger family p... Lus10033823
[exp]
8.9 0.9529
AT1G02860 BAH1, NLA nitrogen limitation adaptation... Lus10030375
[exp]
9.5 0.9484
AT3G04970 DHHC-type zinc finger family p... Lus10018967
[exp]
10.4 0.9502
AT5G66930 unknown protein Lus10019643
[exp]
10.5 0.9524
AT3G27020 YSL6 YELLOW STRIPE like 6 (.1) Lus10032024
[exp]
11.6 0.9538

Lus10003821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.