Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03220 407 / 2e-142 ATHEXPALPHA1.22, ATEXP13, ATEXPA13 EXPANSIN 13, expansin A13 (.1) AT5G05290 270 / 1e-88 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G37640 269 / 3e-88 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G56320 268 / 7e-88 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT3G55500 267 / 2e-87 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT1G69530 264 / 2e-86 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5) AT5G02260 262 / 1e-85 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT3G29030 261 / 4e-85 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT2G03090 260 / 6e-85 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT2G39700 260 / 7e-85 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010454 [exp] 464 / 9e-165 AT3G03220 408 / 2e-145 EXPANSIN 13, expansin A13 (.1) Lus10027304 [exp] 424 / 6e-149 AT3G03220 411 / 1e-146 EXPANSIN 13, expansin A13 (.1) Lus10039009 [exp] 422 / 2e-148 AT3G03220 412 / 7e-147 EXPANSIN 13, expansin A13 (.1) Lus10010455 [exp] 298 / 8e-101 AT1G10200 277 / 3e-96 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10037164 [exp] 275 / 2e-90 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10036763 [exp] 274 / 3e-90 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10039010 [exp] 270 / 2e-89 AT1G10200 285 / 2e-99 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10027305 [exp] 267 / 1e-88 AT1G10200 280 / 2e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10008603 [exp] 266 / 2e-87 AT2G40610 397 / 2e-141 expansin A8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G080200 [exp] 409 / 6e-143 AT3G03220 409 / 8e-146 EXPANSIN 13, expansin A13 (.1) Potri.017G140000 [exp] 401 / 7e-140 AT3G03220 403 / 4e-143 EXPANSIN 13, expansin A13 (.1) Potri.008G088300 [exp] 276 / 4e-91 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 273 / 1e-89 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.013G060800 [exp] 266 / 3e-87 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.016G135200 [exp] 266 / 3e-87 AT2G40610 400 / 6e-143 expansin A8 (.1) Potri.006G108000 [exp] 266 / 5e-87 AT2G40610 379 / 2e-134 expansin A8 (.1) Potri.019G057500 [exp] 265 / 1e-86 AT2G40610 374 / 2e-132 expansin A8 (.1) Potri.001G001100 [exp] 264 / 2e-86 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.001G240900 [exp] 264 / 3e-86 AT2G39700 449 / 6e-162 expansin A4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10003822 pacid=23145978 polypeptide=Lus10003822 locus=Lus10003822.g ID=Lus10003822.BGIv1.0 annot-version=v1.0 ATGGCGATCTCGTTTCTCCTCCTCCTTATCCTCATCCTCTTCCCGCCACTAGTTCCTTACGCAGCTTCCTCTCCTCCGCAAGACAGCATCCCTTCTTCTT CCTCCTCAAACGACTGGCTTTCAGCTCGAGCAACCTTCTACGCAGCGTCGGACCCGCGGGACGCCGTCGGCGGAGCATGCGGTTACGGAGACCTAGTCAA GGCAGGGTACGGACTCGCCACCGTCGGCCTGAGCGAGTCACTGTTCGCCCGCGGCCAGATCTGCGGAGCATGCTTCGAGCTCCGGTGCGTCGACGATCTA CGCTGGTGTATCCCGGGAACTTCGATTATAGTCACGGCGACGAACTTCTGCGCTCCGAATTACGGATTCGATTCCGACGGCGGCGGGCGGTGTAACCCTC CGAATCGGCATTTTGTGCTTCCGATTGAGGCGTTTGAGAAGGTCGCTGTTTGGAAGGCTGGGAATATGCCTGTTCAGTACCGGAGGATAAAGTGCAGAAA AGAAGGCGGGATAAGGTACACGATATCTGGATCGAGCATCTTCATATCAGTGCTGATTAGCAACGTTGCAGGAGCGGGAGACATCAATGCGGTGAAGATC AAAGGGTCGAGGACCGGGTGGCTTCCCATGGGAAGGAATTGGGGACAGAACTGGCACATCAATGCCGACTTGAGAAACCAGCCGTTGTCGTTCGAGGTGA CTAGTAGTGATGGCCAGACTGTAACATCGTACAGTGTCGCCCCTAAAGATTGGAGCTTTGGGCAAACTTTTGAAGGCAATACTCGTGTATATCACAAATC TTGCTTCAGATGCCACCACTGTAACAACACCCTTAAGTTGAGCAACTATTGTTCTTTCGAAGGAGTCCTCTATTGTAAGCCTCACTATAACCAGACTTTC AAAAAAACCGGTAGCCTTGAGAAAAGTTTTGAAGGAATTCCTAAAGTGGCAAAACCTGAAAAGTCTATCGAGAGTGAGAATGCGAGTAAGGTGTCAAGCT TATTCGCGGGGACAAAAGAAAAATGCAAAGAGTGCACAAAAACTGTGTATCCAATTGAGAGGGTGACAGTGAACAATACATGGTACCACCGGAAGTGTTT CAAGTGCAGCCACGGAGGATGCACCATAAGCCCGTCAAACTACATTGCATATGAAGGAAAGTTGTATTGCAAACACCATCATATCCAATTGTTCAAGGAG AAGGGAAATTATAGCCAACTTAGCGGTGATGACAACGACGATGGCAATACCATCGTGGTGGATGTGGCAGCGGCAGCAACTGTTACCGCTGCTGCCTGA
AA sequence Show only first row Show all	>Lus10003822 pacid=23145978 polypeptide=Lus10003822 locus=Lus10003822.g ID=Lus10003822.BGIv1.0 annot-version=v1.0 MAISFLLLLILILFPPLVPYAASSPPQDSIPSSSSSNDWLSARATFYAASDPRDAVGGACGYGDLVKAGYGLATVGLSESLFARGQICGACFELRCVDDL RWCIPGTSIIVTATNFCAPNYGFDSDGGGRCNPPNRHFVLPIEAFEKVAVWKAGNMPVQYRRIKCRKEGGIRYTISGSSIFISVLISNVAGAGDINAVKI KGSRTGWLPMGRNWGQNWHINADLRNQPLSFEVTSSDGQTVTSYSVAPKDWSFGQTFEGNTRVYHKSCFRCHHCNNTLKLSNYCSFEGVLYCKPHYNQTF KKTGSLEKSFEGIPKVAKPEKSIESENASKVSSLFAGTKEKCKECTKTVYPIERVTVNNTWYHRKCFKCSHGGCTISPSNYIAYEGKLYCKHHHIQLFKE KGNYSQLSGDDNDDGNTIVVDVAAAATVTAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10003822 [exp]	0	1
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10021234 [exp]	1.0	0.8968
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10010454 [exp]	2.4	0.8299
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Lus10028986 [exp]	3.0	0.8268
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10013344 [exp]	4.9	0.8235
AT2G23820			Metal-dependent phosphohydrola...		Lus10015497 [exp]	5.8	0.8528
AT1G61667			Protein of unknown function, D...		Lus10020075 [exp]	7.5	0.8429
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10026638 [exp]	10.2	0.8342
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Lus10007245 [exp]	11.5	0.8291
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10002829 [exp]	11.7	0.8475
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10027718 [exp]	12.0	0.8169

Compare expression of checked genes

Lus10003822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.