Gene [FLAX] | FIBexDB

Lus10003823 [FLAX]

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT3G56970	91 / 3e-21	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
AT5G04150	75 / 1e-15	bHLH	bHLH101	basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
AT3G56980	74 / 2e-15	bHLH	ORG3, bHLH039	OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
AT2G41240	61 / 1e-10	bHLH	bHLH100	basic helix-loop-helix protein 100 (.1.2)
AT1G71200	42 / 0.0003	bHLH	bHLH160	basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10010453 [exp]	298 / 2e-101	AT3G56970	126 / 8e-35	OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Lus10027300 [exp]	120 / 9e-32	AT3G56970	139 / 2e-39	OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Lus10039006 [exp]	115 / 6e-30	AT3G56970	142 / 1e-40	OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.006G037600 [exp]	96 / 3e-23	AT3G56970	184 / 9e-58	OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Potri.016G037300 [exp]	92 / 6e-22	AT3G56970	162 / 5e-49	OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Potri.006G037200 [exp]	86 / 9e-20	AT3G56970	168 / 2e-51	OBP3-RESPONSIVE GENE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF00010 [flax] [poplar]	HLH	Helix-loop-helix DNA-binding domain

Representative CDS sequence

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>Lus10003823 pacid=23145971 polypeptide=Lus10003823 locus=Lus10003823.g ID=Lus10003823.BGIv1.0 annot-version=v1.0

ATGATGGCAATGTCATCAACATCATCATTCTCCTCTCACCAATCCAATATTAATCTCCCTTTGATCCCATCATCATCATCATCATCTAATTGGCCTTTGT

TATTAGATGATCCTAATTTCATAACCCTACTACCTAATCTTAACCTTGATCAACCACCCACTCTCTTCCCGGCTGCGGCAGAGCAAGTCGGCGATGGGAC

GACTACCACGACCACGGTGAAGAAGATGAACCATAACGCTAGTGAAAGGCAAAGGAGGAAGAAGATGAATGCCCTTTATTCTTCCCTTCGTAGCTTGCTT

CCTTCTTCTGATCATCATCCCATGAAGAAGCTAAGCATACCAACAACAGTCTCCAGAGTGGTGAAGTACATACCAGAGCTTCAACAACAAGTGGAAACCC

TAACCCTAAGGAAGAAGCAATTGCTATCAACCTCATTAGCTCATATCCCTAAGCCCGAAGATGTGCAAACCCTAGGCCAACAAGACAAACAAAACATCAC

GAATCTCCAAACAAGAGGTAGCAGTAGTACTAATTTCTCCCCATCTTCGTCCCTATCTTCATCCTCATCCACTGTTTCGGTGAGTTGGGTAAGCGACGAT

GAAGTCATGGTACAAGTTTCGATCGGCACGACCAACAACATGGTACACGTGTCAGATCTGTTGTTCCATCTTGAAGAAGAGTGTGGACTTTTCGTGATGA

ATACTTCCTCGTTCCGGTCTCCTCAAGGGATGACATTTTACAATCTCCATCTTTATGTTGAGGAGTGTCGTAGAGGACTGGTGTTGTTATTGAATAGTGA

AGTTTTAAGTGAGAGGCTCACAAGCTTCCTTAAACAAGGAAGAAGACTTGTTTGTTTCTAA

AA sequence

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>Lus10003823 pacid=23145971 polypeptide=Lus10003823 locus=Lus10003823.g ID=Lus10003823.BGIv1.0 annot-version=v1.0

MMAMSSTSSFSSHQSNINLPLIPSSSSSSNWPLLLDDPNFITLLPNLNLDQPPTLFPAAAEQVGDGTTTTTTVKKMNHNASERQRRKKMNALYSSLRSLL

PSSDHHPMKKLSIPTTVSRVVKYIPELQQQVETLTLRKKQLLSTSLAHIPKPEDVQTLGQQDKQNITNLQTRGSSSTNFSPSSSLSSSSSTVSVSWVSDD

EVMVQVSIGTTNNMVHVSDLLFHLEEECGLFVMNTSSFRSPQGMTFYNLHLYVEECRRGLVLLLNSEVLSERLTSFLKQGRRLVCF

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10003823 [exp]	0	1

Lus10003823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.