Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17620 167 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G11890 125 / 2e-34 EMB3135 EMBRYO DEFECTIVE 3135, unknown protein AT1G65690 75 / 6e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G36970 68 / 2e-13 NHL25 NDR1/HIN1-like 25 (.1) AT5G21130 67 / 5e-13 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01110 64 / 9e-12 unknown protein AT2G46300 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G54540 63 / 1e-11 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06320 62 / 3e-11 NHL3 NDR1/HIN1-like 3 (.1) AT3G11650 60 / 2e-10 NHL2 NDR1/HIN1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037638 [exp] 265 / 5e-89 AT1G17620 201 / 4e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015622 [exp] 261 / 1e-87 AT1G17620 196 / 5e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10026428 [exp] 150 / 5e-44 AT5G11890 209 / 7e-67 EMBRYO DEFECTIVE 3135, unknown protein Lus10024987 [exp] 88 / 2e-21 AT5G11890 87 / 5e-21 EMBRYO DEFECTIVE 3135, unknown protein Lus10007364 [exp] 79 / 3e-17 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031888 [exp] 72 / 7e-15 AT1G54540 236 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10010103 [exp] 71 / 2e-14 AT4G01410 198 / 7e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031317 [exp] 71 / 3e-14 AT1G54540 231 / 1e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020783 [exp] 70 / 6e-14 AT5G36970 229 / 2e-75 NDR1/HIN1-like 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G039400 [exp] 237 / 4e-78 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 234 / 2e-77 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.018G052500 [exp] 161 / 2e-48 AT5G11890 198 / 3e-62 EMBRYO DEFECTIVE 3135, unknown protein Potri.006G228600 [exp] 154 / 8e-46 AT5G11890 171 / 4e-52 EMBRYO DEFECTIVE 3135, unknown protein Potri.012G145500 [exp] 82 / 2e-18 AT5G36970 238 / 2e-78 NDR1/HIN1-like 25 (.1) Potri.015G148200 [exp] 79 / 5e-17 AT5G36970 227 / 2e-74 NDR1/HIN1-like 25 (.1) Potri.002G167300 [exp] 77 / 1e-16 AT2G46300 177 / 5e-55 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.004G067100 [exp] 73 / 4e-15 AT1G54540 203 / 3e-65 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 71 / 9e-15 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.017G154000 [exp] 71 / 3e-14 AT1G54540 242 / 1e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10003824 pacid=23162611 polypeptide=Lus10003824 locus=Lus10003824.g ID=Lus10003824.BGIv1.0 annot-version=v1.0 ATGGCGGACAGAGTCTATCCAGCCAAAACCGCTGCTGCAACAACACCCGCGCCCGCCTTCCCCGCCCCCAAGTCTCAAATCTACCCCTCATACCGTCCTC CGCCCAACCGCAAATTCCGCCGTAACCGCCGGAGTTGCTGTTGTTGCCTCTGCTTCTGGATAACTCTAATTATCCTCTCCTTGATTTTACTCGCCGGCAT TGCCGGGACTGCTGTCTATGTCATCTACCGCCCACACCGCCCTTCCTTCACGGTCTCCGGCTTGAAAGTCTCGATTCTTAATGTCACATCTAGCTCCCAC CTCATCTCAAACATCGCCGTCAACATCACGGCCAGGAATCCTAACAAGAGAATCGTGTTTGTCTACAACCCGATCGATATTTCAGTGTTCTCGTCCGATG GTGGGGTCAATTTGGGGAGCGGGAAGGTGCCAGCGTTCGTTCATGGGACGAAGAACACGACTGTGCTCAAGGCATCGATTGCCACCGCCGGAAGTGGAGG CCAGCAGCTGGAAGATGCTGCGGCGACGAAGAAGCTGAGGAGCGAGCTAAAGAAGAAAAACGGGGTCCCGTTGAGGATAGTTGTGGATACTAAAGTGAAA GTGAAGATGGGAGGGCTTAAGACACCCAAAGTTGCTATCCAGGTAGCTTGCTCCGGGATCAAGGCTTCCCAGCCAACTGGGAAATCGCCGATGAGCGGAT CGGTTTCCGCCGCTGATTGTAAGATTGATTTGAGGGTCAAGATCTGGAAGTGGACTTTCTGA
AA sequence Show only first row Show all	>Lus10003824 pacid=23162611 polypeptide=Lus10003824 locus=Lus10003824.g ID=Lus10003824.BGIv1.0 annot-version=v1.0 MADRVYPAKTAAATTPAPAFPAPKSQIYPSYRPPPNRKFRRNRRSCCCCLCFWITLIILSLILLAGIAGTAVYVIYRPHRPSFTVSGLKVSILNVTSSSH LISNIAVNITARNPNKRIVFVYNPIDISVFSSDGGVNLGSGKVPAFVHGTKNTTVLKASIATAGSGGQQLEDAAATKKLRSELKKKNGVPLRIVVDTKVK VKMGGLKTPKVAIQVACSGIKASQPTGKSPMSGSVSAADCKIDLRVKIWKWTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17620			Late embryogenesis abundant (L...		Lus10003824 [exp]	0	1
AT4G00880			SAUR-like auxin-responsive pro...		Lus10032949 [exp]	1.0	0.9153
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	5.5	0.8868
AT3G55420			unknown protein		Lus10040295 [exp]	6.0	0.8622
AT5G17850			Sodium/calcium exchanger famil...		Lus10020318 [exp]	8.3	0.8857
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10008893 [exp]	8.9	0.8836
AT2G25270			unknown protein		Lus10038102 [exp]	10.7	0.8749
AT1G13250		GATL3	galacturonosyltransferase-like...		Lus10041489 [exp]	11.0	0.8480
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10009271 [exp]	12.0	0.8818
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10017313 [exp]	12.6	0.8409
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022728 [exp]	13.0	0.8475

Compare expression of checked genes

Lus10003824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.