Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17665 281 / 8e-93 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006153 [exp] 406 / 3e-141 AT1G17665 125 / 7e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G038600 [exp] 305 / 6e-102 AT1G17665 294 / 2e-98 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003829 pacid=23162612 polypeptide=Lus10003829 locus=Lus10003829.g ID=Lus10003829.BGIv1.0 annot-version=v1.0 ATGGCGGCTCTCGCCGTAGCTTTCGCTTCTTCATATATCTCCAATCTTATCTGCAATACAACCGCCGTTCCGATCTCTTACTATTTCTTCTCCTTCCCAA CCCACAAAACCCAACCGCAACCCATGCTGCTCTCTCATCTTCTCCCTTTCTTCTTCTTTTTCTTCGCCTTCACCCTCTCATTCACATTCTCTCTATATTT CCTCTGCAGAAGTCTCCGGAGGCAGAGGCGAGATGAGCAACTCGATCCGGCTGTCAAATCCGATTCTTTGTCCAAATTGATTGATGGGGTTCGTGAAATT GAGGCCACCACCCACTTGTCCCATTCCCTCCTCCTCAAAATATTGCCCTCCGATTCCCCCAAGTGGGCTTCAATGTTCGCCGGTGATCCAGCTGGACCGC AGTCGGCTCCGGGTGATGACCCGGAAGCATCATCCGCCAGCGGAGATTCACAGAGGTTAAAGAAGAAGAAGAGGACAGCGAAGAAGAAGCGATTGGCTTT GAAAATCGACGACAATGATGGTGGCAGTGAAGAAGAGAAGGGTTTGGTTAGGAAAATGTCAGATGGTTCGGGTTTGTGCCGAATGAAGCCCGAGCTGGTT TGTTTGTACCCATTTACATCTGCTAGCAGTGCCACTCAGAGGAAAATTAAGCAGCAGTATGATCAGCTTGTGAAGTGCAATGAAAAGAAAGGATTGACAT TGGCTCAGGTTGCAGAGTTTGCCAATTGCTTGGTTGAGGCTAGAACTGAGTTGCAGCATAAGTCAGAAGTAATTAAACGAAGGTTCACAATAACAAAAGC TTTATTATTTAAGGCAGACAGATCTTCAATAGATCGCCTCCGTCAACAGATATACAAGCTAGAAGTAGAACAGAAGAGATTAGAAGAGGATGCATTTGTC TATAACTGGCTTCAGCAGCAGCTTAAACTTTCACCAGCTTACAAAAAGATGCTTGAAATCAGTGTAAGCATGGAGAAGGAGAATAAATCTAATGAGATGG TGGAAAATGATGCCAACTTTGTTAGTGACATTTCCTTTGAAGAGCTGCTAGCACAAGAAAAAAAGGACTCATTTTGGTTAGTGGTCTCTCCAAAGACGTT AAGAGTTATTCACGTTATGGGTGGCTAG
AA sequence Show only first row Show all	>Lus10003829 pacid=23162612 polypeptide=Lus10003829 locus=Lus10003829.g ID=Lus10003829.BGIv1.0 annot-version=v1.0 MAALAVAFASSYISNLICNTTAVPISYYFFSFPTHKTQPQPMLLSHLLPFFFFFFAFTLSFTFSLYFLCRSLRRQRRDEQLDPAVKSDSLSKLIDGVREI EATTHLSHSLLLKILPSDSPKWASMFAGDPAGPQSAPGDDPEASSASGDSQRLKKKKRTAKKKRLALKIDDNDGGSEEEKGLVRKMSDGSGLCRMKPELV CLYPFTSASSATQRKIKQQYDQLVKCNEKKGLTLAQVAEFANCLVEARTELQHKSEVIKRRFTITKALLFKADRSSIDRLRQQIYKLEVEQKRLEEDAFV YNWLQQQLKLSPAYKKMLEISVSMEKENKSNEMVENDANFVSDISFEELLAQEKKDSFWLVVSPKTLRVIHVMGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17665			unknown protein		Lus10003829 [exp]	0	1
AT4G36690		ATU2AF65A	U2 snRNP auxilliary factor, la...		Lus10041725 [exp]	5.3	0.7514
					Lus10009807 [exp]	7.2	0.6946
AT1G32090			early-responsive to dehydratio...		Lus10002133 [exp]	12.6	0.6971
AT3G26990			ENTH/VHS family protein (.1)		Lus10005665 [exp]	15.9	0.7002
AT5G62070		IQD23	IQ-domain 23 (.1)		Lus10027435 [exp]	19.5	0.6011
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10037431 [exp]	24.7	0.6748
AT4G10730			Protein kinase superfamily pro...		Lus10001677 [exp]	32.6	0.6308
AT2G26270			unknown protein		Lus10009795 [exp]	33.9	0.6572
AT1G17665			unknown protein		Lus10006153 [exp]	35.7	0.6412
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018563 [exp]	36.9	0.6483

Compare expression of checked genes

Lus10003829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.