Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024749 [exp] 240 / 2e-79 ND / Lus10006395 [exp] 235 / 7e-77 ND / Lus10033051 [exp] 232 / 1e-75 ND / Lus10039395 [exp] 161 / 2e-48 ND / Lus10004816 [exp] 159 / 1e-45 AT5G01470 342 / 6e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10042590 [exp] 149 / 8e-44 ND / Lus10027052 [exp] 145 / 2e-43 ND / Lus10032910 [exp] 147 / 2e-42 ND / Lus10022574 [exp] 144 / 8e-42 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003831 pacid=23162614 polypeptide=Lus10003831 locus=Lus10003831.g ID=Lus10003831.BGIv1.0 annot-version=v1.0 ATGCGGAGAACAAGAGGAAGAGGAGCTCCCTTCGATAGGGAGATCAACAGAGAGGTGGTACTGTCGGCATTCTCCGGGTTAGGCCGCTCAGTGATGATCA TCTTGTCGATCTTTGGCGAAGGGCAAACGCTGGGAAGCGTCGATGTGGAGCGCACAGAAGGCCAGAGTCATCGACGACGGCCAGAGATACGTTCCCAGAT TCATGGACAATCATGGCGTGGCTGGAGGTTAAAAGACTTCCCTGAAGTGGATACCGGTGACGGAATTGATTACTCCGACTGGTTCTTATCCGATGATGTG TACGACACTATCGGTGAAGTGGCGCAATCAGCAAAACAGATTTCTTTGACGCTTAATTTCCATCTGATCAAAGGGTCAAATAAAAGCAATGACTCGGAAA AGGAGTGTCGGGTGTATCTTTATTGCTCACGTGGACCAGTTGGCAAGTATGAGGGTTCAGATCCGTCGGAACGTGCTACGAAGTCAAAGAAGTGTAATTG CCCATTCAGACTTGCCGTCCGATCAAAGGTGGTAGATTGCGAGTGGAAGTATTTTATTGATGGAGTTGGAGACATAAAGAACCCTAATAAGTTGAAGGAG TACCACAATCATCCTCTGATTCATTTCACTGAAGGACTTGATACACTATTTGAGGGATATCATGCATCGATCGAGGGTCAAGTCATAGAAGTGCAGCGGG CTATCGATGAATCACGAAGCAAGACTCATCGTTTCTCGCATAGACGACCGTTTACGTATCTGAAAAATGAAGTCAGCCTCTGGGGTATTGAGTTGGTGAA TGAGACGTTATCAAGTAAGGACGATTATGATTGTGTGATTGAAGATACGCATAGCCTGCCTTGTACTTGTAGGCTCGAATCTATAGAGCGCGATGGGGTC GAGCTAAAATCATACCAAAACAAATGTGATGATTGGATGGTCCGAAACCCCACCTTCAGTCTCTCCTCCTTTTCAGCTTCTCTGCCCGTGGCGATTTGA
AA sequence Show only first row Show all	>Lus10003831 pacid=23162614 polypeptide=Lus10003831 locus=Lus10003831.g ID=Lus10003831.BGIv1.0 annot-version=v1.0 MRRTRGRGAPFDREINREVVLSAFSGLGRSVMIILSIFGEGQTLGSVDVERTEGQSHRRRPEIRSQIHGQSWRGWRLKDFPEVDTGDGIDYSDWFLSDDV YDTIGEVAQSAKQISLTLNFHLIKGSNKSNDSEKECRVYLYCSRGPVGKYEGSDPSERATKSKKCNCPFRLAVRSKVVDCEWKYFIDGVGDIKNPNKLKE YHNHPLIHFTEGLDTLFEGYHASIEGQVIEVQRAIDESRSKTHRFSHRRPFTYLKNEVSLWGIELVNETLSSKDDYDCVIEDTHSLPCTCRLESIERDGV ELKSYQNKCDDWMVRNPTFSLSSFSASLPVAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003831 [exp]	0	1
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	1.0	1.0000
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10018901 [exp]	1.7	1.0000
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	2.8	1.0000
AT5G56790			Protein kinase superfamily pro...		Lus10000773 [exp]	5.5	1.0000
AT5G49900			Beta-glucosidase, GBA2 type fa...		Lus10023340 [exp]	6.5	1.0000
					Lus10024762 [exp]	7.5	1.0000
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10029930 [exp]	8.2	1.0000
					Lus10033834 [exp]	8.7	1.0000
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10003438 [exp]	8.8	1.0000
AT2G18560			UDP-Glycosyltransferase superf...		Lus10008248 [exp]	8.9	1.0000

Compare expression of checked genes

Lus10003831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.