Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72970 377 / 2e-128 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G12570 288 / 2e-93 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 272 / 1e-87 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT3G56060 261 / 5e-83 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 251 / 2e-79 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51930 240 / 7e-75 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 227 / 1e-70 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 224 / 2e-69 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003176 [exp] 506 / 2e-178 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10037640 [exp] 400 / 1e-136 AT1G72970 768 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015623 [exp] 399 / 1e-130 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10024487 [exp] 296 / 2e-96 AT1G12570 709 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10017827 [exp] 292 / 5e-95 AT1G12570 710 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10027406 [exp] 275 / 3e-88 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10002957 [exp] 272 / 5e-87 AT1G12570 701 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10031663 [exp] 271 / 1e-86 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015012 [exp] 262 / 3e-83 AT5G51950 667 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G200800 [exp] 429 / 2e-148 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.003G039000 [exp] 413 / 4e-142 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G111500 [exp] 301 / 1e-98 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G135200 [exp] 280 / 2e-91 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.008G009600 [exp] 241 / 2e-75 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168200 [exp] 234 / 4e-73 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 226 / 6e-70 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168100 [exp] 224 / 4e-69 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10003833 pacid=23162609 polypeptide=Lus10003833 locus=Lus10003833.g ID=Lus10003833.BGIv1.0 annot-version=v1.0 ATGGTGGTTCCTGGAGCAGATATAGCAGGAGGAGCAGTGATGAGTATCACCACCAAGCTCCTCTTTCTTTCCTCCTTCCTCCTCATGCTCCTTCTCTCTT CTTCTCAAGGGAAGGAGGAGGAATACTATGAGTTCAAGTACCCATTCATAAGGAAAGCAAGCACATTTACATCATCATCTTCATTCTCATCAAGTGGCAC AGCCGCAGACAAGTCGTACGACTACATAATTGTGGGTGGGGGGACAGCTGGTTGCCCTCTTGCGACAACACTCTCTCGCAAATTCTCAGTTCTTCTCCTG GAAAGAGGAGGAGTCCCTTTCTCCAATTCCAATGTCACCTTCCTCAGAAACTTCCACATTGCTTTGGCTGATACATCCCCAACCTCTGCTTCCCAGTACT TTGTCTCAACCGATGGTGTTCTAAATGCTAGAGCCAGAGTTTTGGGTGGTGGCACTTCCATCAATGCTGGCTTCTACACTAGAGCTAACCAAAGGTTTAT AGAAAAAGTTGGATGGGACACAAGGTTGGTGAATGAGTCATACCCATGGGTTGAAAAGCAAATAGTCCACAGGCCTCAAGTGGAACCATGGCAGGTTGCT GTTAGGGACAGTCTGCTAGATCTTGGAGTTTCACCTTTCAATGGCTTCACCTATGACCACATCTACGGTACCAAGTTCGGAGGTACCATTTTCGACAGGT TCGGGCGTAGGCACACAGCTGCAGAGCTCCTCGTGACTGCCAACCGTAGGAGGCTCACTGTGTTGGTCCATGCTACAGTCCAGAGGGTTGTGTTCGACAC GTCAGGGAGGATGCCAAAGGCTGTTGGTGTTGTTTTCAAGGATGAAAAGGGGAACCAACACCAAGCATTCCTTGGAAGTAATCCCAGGAGTGAAGTCATA CTCTCCTCTGGAGCCATTGATCATGTTGCTTAG
AA sequence Show only first row Show all	>Lus10003833 pacid=23162609 polypeptide=Lus10003833 locus=Lus10003833.g ID=Lus10003833.BGIv1.0 annot-version=v1.0 MVVPGADIAGGAVMSITTKLLFLSSFLLMLLLSSSQGKEEEYYEFKYPFIRKASTFTSSSSFSSSGTAADKSYDYIIVGGGTAGCPLATTLSRKFSVLLL ERGGVPFSNSNVTFLRNFHIALADTSPTSASQYFVSTDGVLNARARVLGGGTSINAGFYTRANQRFIEKVGWDTRLVNESYPWVEKQIVHRPQVEPWQVA VRDSLLDLGVSPFNGFTYDHIYGTKFGGTIFDRFGRRHTAAELLVTANRRRLTVLVHATVQRVVFDTSGRMPKAVGVVFKDEKGNQHQAFLGSNPRSEVI LSSGAIDHVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003833 [exp]	0	1
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10003176 [exp]	1.0	0.9870
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Lus10031321 [exp]	1.7	0.9521
AT4G33180			alpha/beta-Hydrolases superfam...		Lus10038076 [exp]	2.4	0.9547
AT4G34380			Transducin/WD40 repeat-like su...		Lus10038296 [exp]	2.8	0.9488
AT1G14430			glyoxal oxidase-related protei...		Lus10030798 [exp]	3.0	0.9392
AT1G14430			glyoxal oxidase-related protei...		Lus10013274 [exp]	3.9	0.9476
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10025215 [exp]	5.7	0.9223
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Lus10038071 [exp]	6.5	0.9474
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Lus10018360 [exp]	6.9	0.9452
AT1G14430			glyoxal oxidase-related protei...		Lus10013275 [exp]	7.0	0.9466

Compare expression of checked genes

Lus10003833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.