Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24740 828 / 0 Protein of unknown function (DUF1162) (.1), Protein of unknown function (DUF1162) (.2) AT4G17140 47 / 6e-05 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037833 [exp] 53 / 1e-06 AT1G48090 2202 / 0.0 calcium-dependent lipid-binding family protein (.1) Lus10017107 [exp] 46 / 0.0001 AT1G48090 3351 / 0.0 calcium-dependent lipid-binding family protein (.1) Lus10011036 [exp] 44 / 0.0006 AT4G17140 3546 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3) Lus10003007 [exp] 44 / 0.001 AT4G17140 3544 / 0.0 pleckstrin homology (PH) domain-containing protein (.1), pleckstrin homology (PH) domain-containing protein (.2), pleckstrin homology (PH) domain-containing protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G455600 [exp] 1030 / 0 AT5G24740 3006 / 0.0 Protein of unknown function (DUF1162) (.1), Protein of unknown function (DUF1162) (.2) Potri.008G100600 [exp] 50 / 1e-05 AT1G48090 3782 / 0.0 calcium-dependent lipid-binding family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003834 pacid=23168783 polypeptide=Lus10003834 locus=Lus10003834.g ID=Lus10003834.BGIv1.0 annot-version=v1.0 ATGGTACACCCATATGCGACTTGCCCTTATGCATGGGATGAACCTTGTTACCCTCATCGTCTTGCAATTGAGGTCCCTGGAGAACGTGTTGTTGGTCTGT ACTCTCTTGATGTGATGAAGGAACATGCAGCAGTGCACATAAAGGCAACTTCTGAGAAACCTGAAAGAACATTACTCGTCTCCGTTCGTGCCGAAGGAGC AATAAAGGTTTTAAGCATCATCGATTCCAGTTACCATGTTTTTGATTTGGAAGATCGAACACCTACTTGGTTCCAACAAAATAGTGAGCCGAAACCGGAA ACGTATGTCGATTACGAGGAGAAACTATCCCTTGCTATATCTCATGTTGGTATATCTCTCGTAAATAATGATCCTCAGGAATTGCTTTTTGCTTGTGCAA AGAACATCACCCTTGAATTGCTTCAGAGTCTGGATCAACAAAAGTTATCTTTCGAAATCTCATCATTGCAAATAGACAACCAGTTGGCAACAACCCCGTA TCCTGTAATCTTGTCTTTCAATCAAGAAAATAAAAGCAGTGCATGCAGCCAGAAATCAAAGGATGATAATGCAAGATCTATAAGTGACAGAGGATTGCAG ATAGCTTCAAATCCTTTTCAATCCGTACTCCATCTGGCTGTTGCGACCTGGAGGAAGAAAGACAGTTCATTGCTTTCATTTGAGTGCATAAGTTTAAGAG TAGCAGATTTCCGTCTGGAACTTGAACAAGAAGTTATCTTAAGCTTGCTTGATTACTTCAAAGCTGTATCTGCTGGGTCTCGGAGTAAACAATTGCCATT TTCAGATCCTGCACACATTCCTCTTCTTTATGATACAGACAATAATAATTATGTCATTTCAAGGCAAGGAAAACATTTTGCCAAGCATTTAGCTATTAGA AAGAGTAATATAGGTTGCGGCCCTCTTCCTTCAGTAGTTCCAATTGGTGCCCCTTGGCAAAATATCTACCGACTTGCTGGGAAGCAGAAGAAGATTTATG TGGAGGTTTTTGATCTGTCTCCCATCAAGTTCACTTTGAGCTTTTCAAGTTCTCCATGGATTCTTAGGAACGGTATTCTTACATCAGGAGAGTCTCTTAT CCATAAACGTCTAATGGCTGTTGCTGATGTCGAGGGAGCTCGAATCAATCTCAAACAATTGACTATTGCACATCAGATGGCAAGTTTAGAATCAATGAGA GACATTATCATTAGGCATTACACTCGTCAACTTCTTCACGAGATATATAAGGTATTTGGCTCTGCTGGCGTTATTGGTAATCCTATGGGTGTAGCAAGGA GTTTAGGGCTTGGTGTCAGAGATTTTCTGTCAGTTCCTGCTAAGAGTGTACTGAAGAGCCCTAGTGGGCTTATAACAGGGATGGCACAAGGTACTGGTAG TCTTGTGAGTAACACTGTGTATGCTTTAAGTGATGCTGCCACGCAATTTAGTAAAGCTGCACACAAGGGGATTGTTGCATTTACTTTTGACGACCAAGCT GTTGCAAGGATGGAAAAGCTACAGAAAGGCGCTCCTCCACAGAGTAAAGGTGTAATAAGTGAAGTCCTCGAGGGTTTAACTGGTCTCCTTCAATCTCCAA TTAAAGAAGCTGAGAAGCACGGGCTTCCTGGGATTTTCTCAGGTCTTGCGTTAGGAATAACAGGACTTGTGGCTAAGCCCGCAGCTAGTCTTCTTGAAGT CACAGGGAAAACTGCGCAAAGTATAAGAAACCGGAGCCGGCTATACCATCAACGGTACAGAGTCAGATTTCCAAGACCGTTAAGTCCTCAACTTCCTTTA AGGCCTTACTGCATGGAAGAAGCAATTGGAACATCAGTGCTTTCAGGAAAACTCAAGGATGAGGTGTTAGTGGTGTGCAGACCACTTAAAGTAGCCGGTA AATTCGTCCTTGTCACGGAGAGATTGGTACTTAAAGTCTACTCTTGGAGCTTGGTAGACTTAGGAAATCCGGGTTTCCAAGGAGTACCTACAGATCCAGA CTGGTTGGTTGAGTCAGAAATTGGTCTGGACAGTGTCATCCACGCTGATACAGTGGACGGGGTAGTGCACATTGTTGGGAGTAGCTCAGATGCCTTAGTT AGGCAGAACCAACTACAACATTCTAAAGACTCCAAGGCAAGGCGGCAGTGGACGAATCCTTCAACTCCTCTCCCGCTCTTCCAAACTAACCTCGAACTCC ACTCGGCAAATGATGCACAAGACTTGTTACATGTTCTTATGTCCACCATTGAAGGGGCAAAAGGCAAGAGGCAGGGATGTGGGTATGTGCTACACCGGAG TAATATGATCTAA
AA sequence Show only first row Show all	>Lus10003834 pacid=23168783 polypeptide=Lus10003834 locus=Lus10003834.g ID=Lus10003834.BGIv1.0 annot-version=v1.0 MVHPYATCPYAWDEPCYPHRLAIEVPGERVVGLYSLDVMKEHAAVHIKATSEKPERTLLVSVRAEGAIKVLSIIDSSYHVFDLEDRTPTWFQQNSEPKPE TYVDYEEKLSLAISHVGISLVNNDPQELLFACAKNITLELLQSLDQQKLSFEISSLQIDNQLATTPYPVILSFNQENKSSACSQKSKDDNARSISDRGLQ IASNPFQSVLHLAVATWRKKDSSLLSFECISLRVADFRLELEQEVILSLLDYFKAVSAGSRSKQLPFSDPAHIPLLYDTDNNNYVISRQGKHFAKHLAIR KSNIGCGPLPSVVPIGAPWQNIYRLAGKQKKIYVEVFDLSPIKFTLSFSSSPWILRNGILTSGESLIHKRLMAVADVEGARINLKQLTIAHQMASLESMR DIIIRHYTRQLLHEIYKVFGSAGVIGNPMGVARSLGLGVRDFLSVPAKSVLKSPSGLITGMAQGTGSLVSNTVYALSDAATQFSKAAHKGIVAFTFDDQA VARMEKLQKGAPPQSKGVISEVLEGLTGLLQSPIKEAEKHGLPGIFSGLALGITGLVAKPAASLLEVTGKTAQSIRNRSRLYHQRYRVRFPRPLSPQLPL RPYCMEEAIGTSVLSGKLKDEVLVVCRPLKVAGKFVLVTERLVLKVYSWSLVDLGNPGFQGVPTDPDWLVESEIGLDSVIHADTVDGVVHIVGSSSDALV RQNQLQHSKDSKARRQWTNPSTPLPLFQTNLELHSANDAQDLLHVLMSTIEGAKGKRQGCGYVLHRSNMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24740			Protein of unknown function (D...		Lus10003834 [exp]	0	1
AT2G46060			transmembrane protein-related ...		Lus10018827 [exp]	2.4	0.8035
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006094 [exp]	2.8	0.7854
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10026856 [exp]	7.0	0.7569
AT1G23230			unknown protein		Lus10035997 [exp]	10.5	0.8052
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	36.6	0.7314
AT5G05570			transducin family protein / WD...		Lus10009082 [exp]	52.3	0.7539
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10013212 [exp]	55.1	0.7204
AT1G17450			B-block binding subunit of TFI...		Lus10000369 [exp]	55.4	0.7206
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	58.2	0.7216
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001860 [exp]	77.3	0.6844

Compare expression of checked genes

Lus10003834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.