Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02810 466 / 1e-159 Protein kinase superfamily protein (.1) AT5G16500 458 / 1e-155 Protein kinase superfamily protein (.1) AT3G07070 440 / 7e-152 Protein kinase superfamily protein (.1) AT3G24790 415 / 1e-142 Protein kinase superfamily protein (.1) AT4G13190 408 / 2e-139 Protein kinase superfamily protein (.1) AT5G18610 407 / 2e-137 Protein kinase superfamily protein (.1.2) AT5G02800 401 / 5e-137 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G20530 395 / 1e-134 Protein kinase superfamily protein (.1) AT5G13160 383 / 6e-129 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT1G07870 379 / 9e-128 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003533 [exp] 740 / 0 AT5G16500 468 / 1e-159 Protein kinase superfamily protein (.1) Lus10020383 [exp] 449 / 5e-146 AT5G16500 358 / 4e-110 Protein kinase superfamily protein (.1) Lus10011866 [exp] 417 / 2e-142 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1) Lus10033966 [exp] 409 / 4e-138 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 408 / 7e-138 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10015756 [exp] 398 / 2e-134 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10040350 [exp] 393 / 1e-133 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 393 / 2e-133 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 389 / 4e-132 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G051600 [exp] 465 / 9e-160 AT3G07070 474 / 4e-165 Protein kinase superfamily protein (.1) Potri.002G241600 [exp] 431 / 6e-148 AT3G07070 543 / 0.0 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 414 / 7e-142 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 409 / 5e-138 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G021500 [exp] 404 / 2e-136 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 399 / 2e-136 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 396 / 4e-135 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.011G137000 [exp] 396 / 4e-135 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 399 / 7e-135 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 395 / 1e-133 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10003836 pacid=23168782 polypeptide=Lus10003836 locus=Lus10003836.g ID=Lus10003836.BGIv1.0 annot-version=v1.0 ATGATGAATTGCTTCCCTTGTTTCCAGTCTCCAAAAAGCAAGAAATCTGCAAGCAAAAGGGACATTGCCTCCCCACCATCAGAGCTTATCGAGGCCGAGC CAAAGAAACAAAAACCAACGGAAGAAAACGGTGGAGGAGGAGGAGCATCCGCTAATTCTGGCGTGGCTCAAACATTCACATTTAGAGAGCTCGCCACCGC CACCAAAAACTTTCGACAAGAATGTCTATTGGGCGAAGGTGGTTTTGGTCGAGTCTATAAAGGCACACTTGCTACCAATGGACAGGTGGTGGCGGTGAAG CAACTTGACAAGCATTCGCAAGGAAACAAAGACTTTGTGACGGAGGTGAACACAATTAGCATCCTAAAGCATCAAAATCTTGTCCAATTGATAGGGTATT GTGCTGATGGAGATCAAAGACTCTTAGTGTTTGAATATATCTACAATGGCTCCCTTGAAACTCATCTCCTTGAGATGACACCGGAGAAAAAGCCTATGGA TTGGATTAAGAGATTAAAGATTGCATATGGCACATCAGAAGGTCTATCATATTTGCATGAGCAAGCAAACCCACCAGTGATTTACAGGGACTTGAAGCCT TCTAACATTTTGTTAGACGATAATTTCAATCCTAAGCTCTCTGACTTTGCATCGGTTAGCTTTGGCCCAGATGGAGATAGTCAATTTCCTATTCAATCCA GGGCAATGGGGACTTATGGCTACTCTGCTCCGGAATATTGCAGCTCTGGCCAACTCACCCCCAAATCAGATGTTTATAGCTTTGGTGTCATACTTTTGGA GCTTATCACTGGACGTAGAGCCATCGATACTACTAGGCCAAATGATGAACAAAATCTTGTCCAATGGGCCCAACCTATTTTTCGAGACCCAAAGCGATTT CCAGACATGGCTGACCCACTTTTAAGAAAGCAATTCCCAGAGAAAGATTTGAACCAAGCAGTAGCAATAGCGGCCATGTGCTTACAAGAGGAGCCAGGAG CACGTCCCTTGATGAGCGATGTCGTCATGACCCTTAGTTTCCTCTCCACTAACCCGAATGACATCCCTTCTCCTTCGACCCCGCCTCCGATGGAAAAATC AAGCTCGGGAAGCTCTTACAACAACCACACAGACGACAGTGAAAGCGATGACTCTAGAGATGAAGACGAGTACCACCACATGGAAGAGGAAGCTGATGAA GAAGGGGAAGAGGAGGAAGATTATGAGAGCTCAAATAATAGTGATGTTGATCTTGACGAGGGAGAAGGAGTTGGTCGGGAAGGATCAACTATAAGCGAAG TGGAGAGTAAGAGATTTAGCAAGAGAATCATCAAATCAAGGAATAGGGGGTCATTAGATGGTACATCTTCGAGGCGTAAGAATTGGAAACGAGTAAAAGA TAAAATTGTACACCAACACAATAGATCAGTATCTAGCAGTCGAAAATGCGACAAAAGAGTGAAAGGGAAGCATAAGGACTCTGTTAATGAAATGAGCCAA CAAAGTAGCGAAAACTCAAGTGACCATCTCAGTAGCAGTATCAGATCTCAGATCCCTCATACTGCCTCATGA
AA sequence Show only first row Show all	>Lus10003836 pacid=23168782 polypeptide=Lus10003836 locus=Lus10003836.g ID=Lus10003836.BGIv1.0 annot-version=v1.0 MMNCFPCFQSPKSKKSASKRDIASPPSELIEAEPKKQKPTEENGGGGGASANSGVAQTFTFRELATATKNFRQECLLGEGGFGRVYKGTLATNGQVVAVK QLDKHSQGNKDFVTEVNTISILKHQNLVQLIGYCADGDQRLLVFEYIYNGSLETHLLEMTPEKKPMDWIKRLKIAYGTSEGLSYLHEQANPPVIYRDLKP SNILLDDNFNPKLSDFASVSFGPDGDSQFPIQSRAMGTYGYSAPEYCSSGQLTPKSDVYSFGVILLELITGRRAIDTTRPNDEQNLVQWAQPIFRDPKRF PDMADPLLRKQFPEKDLNQAVAIAAMCLQEEPGARPLMSDVVMTLSFLSTNPNDIPSPSTPPPMEKSSSGSSYNNHTDDSESDDSRDEDEYHHMEEEADE EGEEEEDYESSNNSDVDLDEGEGVGREGSTISEVESKRFSKRIIKSRNRGSLDGTSSRRKNWKRVKDKIVHQHNRSVSSSRKCDKRVKGKHKDSVNEMSQ QSSENSSDHLSSSIRSQIPHTAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02810			Protein kinase superfamily pro...		Lus10003836 [exp]	0	1

Compare expression of checked genes

Lus10003836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.