Plant FIBer expression Database

Lus10003838 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G19690 93 / 1e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024280
[exp]
184 / 1e-57 AT1G19690 331 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G031500
[exp]
117 / 2e-31 AT1G19690 385 / 3e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10003838 pacid=23166691 polypeptide=Lus10003838 locus=Lus10003838.g ID=Lus10003838.BGIv1.0 annot-version=v1.0
ATGGATATTTGTCGATTACAGGCTCTGGTTCTCCCTGGATCGAGCCATGTGTCTTTCCAAAATCGACCGTTTCCTGCTGCAATGGCTTCACCGTCACCTT
TGCAGTCTGTCAATTTGGCTGAGAGTCGGCTGTTCATGCTGGGAATGGGACACGTTGGCCAGTTCTTCGGCCAACAACTCCGCCAAGAAGGCTGGGGACT
TGCACGAGCACGGGGAAGAAGAAGGAACTCGAGGAAAAGGGATTTGATGTTTACATCCAGAGTTCACGTTGAGGACATCTGTCAGGCTCTCTGGGCTAGC
ATCAAGATTCCATCTTTCAGGAGAATCTACAATATCGTGGATGATGACCCGGCTCCTCGAATGGAAGTGTTTGGATATGCAGAGGAGCTAGTTAAGAAAA
AATGGCCTGATTTGATCAAACAAGGATCACCTTCAGAGGAAGACATGTCAGGTGGTGTCCCGGGTAAGAATAGTTCAAGAGGGGAGAAAAGGGTATCTAA
TACGCGCATTACGAGAGCACTAGGCGTGAAGCTTTATCACTCAAGCTAA
AA sequence
>Lus10003838 pacid=23166691 polypeptide=Lus10003838 locus=Lus10003838.g ID=Lus10003838.BGIv1.0 annot-version=v1.0
MDICRLQALVLPGSSHVSFQNRPFPAAMASPSPLQSVNLAESRLFMLGMGHVGQFFGQQLRQEGWGLARARGRRRNSRKRDLMFTSRVHVEDICQALWAS
IKIPSFRRIYNIVDDDPAPRMEVFGYAEELVKKKWPDLIKQGSPSEEDMSGGVPGKNSSRGEKRVSNTRITRALGVKLYHSS

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G19690 NAD(P)-binding Rossmann-fold s... Lus10003838
[exp]
0 1
AT4G26740 CLO1, ATPXG1, A... CALEOSIN1, ARABIDOPSIS THALIAN... Lus10011775
[exp]
1.4 0.8665
AT3G44800 Meprin and TRAF (MATH) homolog... Lus10013547
[exp]
4.2 0.8506
AT5G46090 Protein of unknown function (D... Lus10013971
[exp]
4.2 0.8040
AT1G59840 CCB4 cofactor assembly of complex C... Lus10010732
[exp]
11.0 0.7846
AT1G30690 Sec14p-like phosphatidylinosit... Lus10031175
[exp]
15.9 0.7952
AT5G17680 disease resistance protein (TI... Lus10005174
[exp]
24.3 0.7720
Lus10033439
[exp]
25.1 0.7815
AT4G18370 DEGP5, DEG5, HH... PROTEASE HHOA PRECUSOR, DEGP p... Lus10028120
[exp]
25.3 0.7707
AT1G01630 Sec14p-like phosphatidylinosit... Lus10040252
[exp]
25.8 0.7982
AT5G19875 unknown protein Lus10006311
[exp]
29.7 0.7847

Lus10003838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.