Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58250 333 / 2e-103 SAB SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) AT5G49680 276 / 2e-83 KIP KINKY POLLEN, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024282 [exp] 626 / 0 AT1G58250 1054 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) Lus10002604 [exp] 457 / 1e-146 AT1G58250 2636 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2) Lus10032833 [exp] 456 / 2e-146 AT1G58250 2629 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110700 [exp] 380 / 1e-119 AT1G58250 3390 / 0.0 SABRE, Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10351 [flax] [poplar] Apt1 Golgi-body localisation protein domain
Representative CDS sequence Show only first row Show all	>Lus10003839 pacid=23166695 polypeptide=Lus10003839 locus=Lus10003839.g ID=Lus10003839.BGIv1.0 annot-version=v1.0 ATGGAAGTTTGGAAAGTTTCAACCACAGCTGCTGCAAAACGTCTTAAAAAGGGCATGTTAAGCAGTGAAGCTCCTTCATCTTCCGGCCATGGAGGGAGGG AGCCTGATCTTGTATCCAAGTTGTCTGGAAATAATGGCAATGGTGAGCCTCTTGCCGTTGAAGCAGTAGATGATAAAAATAAGTCAAAAGATCCCAAGAC TATAAAGTCTGGTCGTCCATCTCAAGAAGAGAAGAAGGTGATTAAGACCCAAGATGAAAAAAGATCTCGTCCACGTAAAGTGATGGAATTCCAGAATATC AAGATCAGTCAGGTTCAGCTACAAATTACCTATGAAAGTTCAAGATTTAATTTGCATGAGCTGAAGCTTCTGATGGATACATTTCACCGTGTGGAGTTCA CTGGAACTTGGAGGAGGTTGTTCTCTCGAGTTAAGAAGCATGTAGTCTGGGGAACTCTGAAATCTGTGACAGGAATGCAGGGCAAGAAATTCAACAAGGG ACATGGCCAGAAAGAGCCAATTGTTCCTCCTGGGGTCCCTGACAGTGACCTTAACCTAAGTGATAATGAAGGTCAGGCAGGGAATCCGTATCAGTACCCA AACTTTCTGAAACGTCCAAGTGATGGAGCAGCAGCAGGTGATGGGTTTGTAACTTCAGTAAGGGGTCTTTTCAACAACCAACGCCGAAAGGCAAAGGCAT TTGTGCTGCGGACAATGAGGGGTGATGAGAATGGATTTCAGGGTGACTGGAGTGATAGTGATGCTGAATTCTCTCCCTTTGCTCGACAGCTCACTATAAC CAAAGCAAAGAAGCTTATCAGGAGGCACACTAAGAAATTCAGGTCCAAGAAAGGTTGGTCTCATCCTAATGAGATGCCTTTATACTTGTTGCTCATGTGT GGTTCAGGTAGCGGACAACAGCAAGACACTATTCCATCATCTCCGAGAGAAACTCCATTCGAGATTGAGAGTGATGCCTCTACTGGGTCTTCACCTTCAT TTGAGGACTTCCCAGAAGGGTTCCAAGTCCAGTAG
AA sequence Show only first row Show all	>Lus10003839 pacid=23166695 polypeptide=Lus10003839 locus=Lus10003839.g ID=Lus10003839.BGIv1.0 annot-version=v1.0 MEVWKVSTTAAAKRLKKGMLSSEAPSSSGHGGREPDLVSKLSGNNGNGEPLAVEAVDDKNKSKDPKTIKSGRPSQEEKKVIKTQDEKRSRPRKVMEFQNI KISQVQLQITYESSRFNLHELKLLMDTFHRVEFTGTWRRLFSRVKKHVVWGTLKSVTGMQGKKFNKGHGQKEPIVPPGVPDSDLNLSDNEGQAGNPYQYP NFLKRPSDGAAAGDGFVTSVRGLFNNQRRKAKAFVLRTMRGDENGFQGDWSDSDAEFSPFARQLTITKAKKLIRRHTKKFRSKKGWSHPNEMPLYLLLMC GSGSGQQQDTIPSSPRETPFEIESDASTGSSPSFEDFPEGFQVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10003839 [exp]	0	1
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10020215 [exp]	4.0	0.8192
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Lus10010770 [exp]	6.9	0.7992
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10007127 [exp]	8.1	0.7674
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10038624 [exp]	9.8	0.7306
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10038985 [exp]	10.9	0.8003
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10022373 [exp]	12.8	0.7947
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Lus10010454 [exp]	13.0	0.7598
					Lus10007688 [exp]	14.7	0.7224
AT3G24630			unknown protein		Lus10011100 [exp]	20.5	0.7716
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034278 [exp]	29.0	0.7340

Compare expression of checked genes

Lus10003839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.