Plant FIBer expression Database

Lus10003840 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003841
[exp]
383 / 3e-134 AT2G44770 407 / 2e-142 ELMO/CED-12 family protein (.1)
Lus10011962
[exp]
186 / 5e-59 ND /
Lus10027047
[exp]
175 / 1e-51 AT1G17930 119 / 1e-28 Aminotransferase-like, plant mobile domain family protein (.1)
Lus10042635
[exp]
164 / 1e-49 AT3G53010 78 / 2e-16 Domain of unknown function (DUF303) (.1)
Lus10012639
[exp]
156 / 4e-47 ND /
Lus10021761
[exp]
152 / 3e-46 ND /
Lus10011950
[exp]
144 / 2e-42 ND 40 / 0.001
Lus10025371
[exp]
136 / 3e-39 ND /
Lus10012491
[exp]
127 / 8e-36 AT5G65920 180 / 1e-53 ARM repeat superfamily protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10003840 pacid=23166697 polypeptide=Lus10003840 locus=Lus10003840.g ID=Lus10003840.BGIv1.0 annot-version=v1.0
ATGATTGAACCCATCTTAGTTGTAACCCCCTTGAACATAGTCGAATTCTTCGATGTTTCCTTCTGGAGAAATTTCTTTCAGGCAAAGACAAAGGCTGGAA
GTAAATCATACAGTACTGATCTTGTTGACGAAGATACAGAGGGAATTCGGAAAATTAGAGGGCAAGGCAAGCAACGCGCTACTTTAGATCTGATGAAAGA
GCGAGAGATTATTGCTTCAAAGCTAACAGTGGTAGATGTGAAGAAGAACAAGCGGACGAAAATCTACGGCTCCCCTCAATGGCTTCCTCCTATTACGTAC
CTGGTTAGGACATTTCCTCCCGATGATGTGGATGAGGTCTCACCACCCCTCTTTGAGTACGAGGATGTATCGGCCTATCCGCACATGGCGTCTCCGCAGA
TGACTTCTCCGCATGGCTTCTTCAAGCTCGTCTCATACTCCACGAGTTTTGGGGTTAGAGGAGGGAAACCTAGCCGATTTGCTCGGGTATGGGAGGAGGA
GGAGGTCGCCAATGGACTAGGGGACGATGGAGTCAGTGTTACATGGGAGTGTACTTTGGGGCTTCCAAATGGTGGACCGTTGAGGATGATAGTGATTCCC
AGTTTTGGCGGTTACATTGCTCATTATGTGTGA
AA sequence
>Lus10003840 pacid=23166697 polypeptide=Lus10003840 locus=Lus10003840.g ID=Lus10003840.BGIv1.0 annot-version=v1.0
MIEPILVVTPLNIVEFFDVSFWRNFFQAKTKAGSKSYSTDLVDEDTEGIRKIRGQGKQRATLDLMKEREIIASKLTVVDVKKNKRTKIYGSPQWLPPITY
LVRTFPPDDVDEVSPPLFEYEDVSAYPHMASPQMTSPHGFFKLVSYSTSFGVRGGKPSRFARVWEEEEVANGLGDDGVSVTWECTLGLPNGGPLRMIVIP
SFGGYIAHYV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10003840
[exp]
0 1
AT2G18370 Bifunctional inhibitor/lipid-t... Lus10001431
[exp]
1.0 1.0000
Lus10005396
[exp]
2.0 1.0000
Lus10022573
[exp]
2.4 1.0000
Lus10006661
[exp]
2.8 1.0000
AT5G67210 IRX15-L IRX15-LIKE, Protein of unknown... Lus10009378
[exp]
3.2 1.0000
AT4G33270 AtCDC20.1, CDC2... cell division cycle 20.1, Tran... Lus10038264
[exp]
3.5 1.0000
AT5G14400 CYP724A1 "cytochrome P450, family 724, ... Lus10003650
[exp]
4.0 1.0000
Lus10012429
[exp]
4.6 1.0000
Lus10000784
[exp]
5.1 1.0000
AT5G48540 receptor-like protein kinase-r... Lus10015472
[exp]
5.2 1.0000

Lus10003840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.