Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44770 384 / 2e-133 ELMO/CED-12 family protein (.1) AT3G60260 381 / 2e-132 ELMO/CED-12 family protein (.1.2.3.4) AT1G67400 255 / 9e-83 ELMO/CED-12 family protein (.1) AT1G03620 243 / 2e-78 ELMO/CED-12 family protein (.1) AT3G03610 237 / 3e-75 ELMO/CED-12 family protein (.1) AT3G43400 182 / 3e-55 ELMO/CED-12 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024285 [exp] 456 / 8e-162 AT2G44770 454 / 1e-163 ELMO/CED-12 family protein (.1) Lus10003840 [exp] 382 / 1e-133 ND / Lus10037017 [exp] 273 / 5e-90 AT1G67400 386 / 2e-136 ELMO/CED-12 family protein (.1) Lus10015790 [exp] 272 / 3e-89 AT1G67400 385 / 4e-136 ELMO/CED-12 family protein (.1) Lus10039805 [exp] 234 / 3e-75 AT1G03620 327 / 3e-114 ELMO/CED-12 family protein (.1) Lus10018574 [exp] 233 / 4e-74 AT1G03620 328 / 7e-114 ELMO/CED-12 family protein (.1) Lus10009523 [exp] 228 / 1e-71 AT3G03610 429 / 4e-152 ELMO/CED-12 family protein (.1) Lus10020344 [exp] 224 / 2e-70 AT3G03610 428 / 1e-151 ELMO/CED-12 family protein (.1) Lus10011962 [exp] 188 / 4e-57 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G138700 [exp] 432 / 2e-152 AT3G60260 459 / 8e-166 ELMO/CED-12 family protein (.1.2.3.4) Potri.014G049800 [exp] 428 / 8e-151 AT3G60260 434 / 1e-155 ELMO/CED-12 family protein (.1.2.3.4) Potri.010G060700 [exp] 278 / 8e-92 AT1G67400 419 / 1e-149 ELMO/CED-12 family protein (.1) Potri.008G175301 [exp] 270 / 8e-89 AT1G67400 422 / 6e-151 ELMO/CED-12 family protein (.1) Potri.013G136200 [exp] 249 / 2e-79 AT1G03620 322 / 1e-110 ELMO/CED-12 family protein (.1) Potri.013G069000 [exp] 238 / 5e-76 AT3G03610 441 / 6e-157 ELMO/CED-12 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04727 [flax] [poplar] ELMO_CED12 ELMO/CED-12 family
Representative CDS sequence Show only first row Show all	>Lus10003841 pacid=23166689 polypeptide=Lus10003841 locus=Lus10003841.g ID=Lus10003841.BGIv1.0 annot-version=v1.0 ATGGAGGACAGAGGAGGGTCGTTCGTCGCTGTTAGAAGGATATCTCAAGGTCTCGACCGAGGCAACAGTACTTGCCATTCAAGCTCTGCTGAGGCCGTAG CAGGGTCTGCTGCTTGGCTCGGTCGTGGTCTTTCTTGTGTCTGTGCCCAGAGACAAGAAACTGATTCTCGTCCGTCGTTTGATTTAACCCCTGCTCAGGA AGAATGCTTGCAGAGCTTACAAAGTCGTATAGAAGTTGCATATGATTGTATGGTTACTGAGCATCAGGAAGCTCTGAAGGCACTATGGAATGCTGCTTTC CCCGAAGAAGAACTATGTGGTCTGATATCTGAGCAGTGGAAGGAGATGGGTTGGCAAGGAAAGGATCCTTCTACAGATTTTAGGGGAGGTGGTTTCATAT CATTGGAGAACTTGTTATTCTTTGCTAGGAATTTCCCGCAATCCTTCCAGGATCTTCTTCAAAAGCGGGAAGGTGAACGTTCTGTATGGGAATACCCATT TGCTGTAGCTGGTGTGAATATCACATTCATGCTAATTCAGATGCTTGATCTTGAAGCAGTTAAACCACGGTCTTTGGTTGGAGCAACGTTCTTAAAGTTC CTCACTGAGAATGAGTCAGCGTTTGATCTTCTGTACTGCATCACATTCAAGCTAATGGACAACCAATGGCTTACCATGCGCGCTTCATACATGGACTTCA ATGCAAAGACAAAGGCTGGAAGTAAATCATACAGTACTGATCTTGTTGACGAAGATACAGAGGGAATTCGGAAAATTAGAGGGCAAGGCAAGCAACGCGC TACTTTAGATCTGATGAAAGAGCGAGAGATTATTGCTTCAAAGCTAACAGTGGTAGATGTGAAGAAGAACAAGCGGACGAAAATCTACGGCTCCCCTCAA TGGCTTCCTCCTATTACGTACCTGGTTAGGACATTTCCTCCCGATGATGTGGATGAGGTCTCACCACCCCTCTTTGAGTACGAGGATGTATCGGCCTATC CGCACATGGCGTCTCCGCAGATGACTTCTCCGCATGGCTTCTTCAAGCTCGTCTCATACTCCACGAGTTTTGGGGTTAGAGGAGGGAAACCTAGCCGATT TGCTCGGGTATGGGAGGAGGAGGAGGTCGCCAATGGACTAGGGGACGATGGAGTCAGTGTTACATGGGAGTGTACTTTGGGGCTTCCAAATGGTGGACCG TTGAGGATGATAGTGATTCCCAGTTTTGGCGGTTACATTGCTCATTATGTGTGA
AA sequence Show only first row Show all	>Lus10003841 pacid=23166689 polypeptide=Lus10003841 locus=Lus10003841.g ID=Lus10003841.BGIv1.0 annot-version=v1.0 MEDRGGSFVAVRRISQGLDRGNSTCHSSSAEAVAGSAAWLGRGLSCVCAQRQETDSRPSFDLTPAQEECLQSLQSRIEVAYDCMVTEHQEALKALWNAAF PEEELCGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLFFARNFPQSFQDLLQKREGERSVWEYPFAVAGVNITFMLIQMLDLEAVKPRSLVGATFLKF LTENESAFDLLYCITFKLMDNQWLTMRASYMDFNAKTKAGSKSYSTDLVDEDTEGIRKIRGQGKQRATLDLMKEREIIASKLTVVDVKKNKRTKIYGSPQ WLPPITYLVRTFPPDDVDEVSPPLFEYEDVSAYPHMASPQMTSPHGFFKLVSYSTSFGVRGGKPSRFARVWEEEEVANGLGDDGVSVTWECTLGLPNGGP LRMIVIPSFGGYIAHYV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44770			ELMO/CED-12 family protein (.1...		Lus10003841 [exp]	0	1
AT4G16580			Protein phosphatase 2C family ...		Lus10016309 [exp]	1.0	0.9116
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Lus10007673 [exp]	1.4	0.8890
AT5G49530			SIN-like family protein (.1)		Lus10024027 [exp]	2.4	0.8535
AT3G30841			Cofactor-independent phosphogl...		Lus10003060 [exp]	5.1	0.8294
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10015716 [exp]	6.6	0.8064
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10021683 [exp]	6.6	0.8313
AT4G02020		SDG10, SWINGER,...	SWINGER, SET DOMAIN-CONTAINING...		Lus10041386 [exp]	6.7	0.8643
AT5G28850			Calcium-binding EF-hand family...		Lus10011811 [exp]	6.9	0.8587
AT5G66050			Wound-responsive family protei...		Lus10028398 [exp]	7.5	0.8265
AT3G53570		AME2, AFC1	FUS3-complementing gene 1 (.1....		Lus10025301 [exp]	7.7	0.8547

Compare expression of checked genes

Lus10003841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.