Gene [FLAX] | FIBexDB

Lus10003842 [FLAX]

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	TF class	Alias	TAIR10 short description
AT1G48120	49 / 1e-06			hydrolases;protein serine/threonine phosphatases (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10034854 [exp]	162 / 7e-51	AT1G48120	69 / 3e-14	hydrolases;protein serine/threonine phosphatases (.1)
Lus10017017 [exp]	130 / 6e-39	AT1G48120	40 / 9e-05	hydrolases;protein serine/threonine phosphatases (.1)
Lus10009239 [exp]	132 / 1e-38	ND	44 / 3e-05
Lus10029535 [exp]	131 / 2e-38	AT1G48120	50 / 1e-07	hydrolases;protein serine/threonine phosphatases (.1)
Lus10002004 [exp]	130 / 3e-38	AT1G48120	58 / 2e-10	hydrolases;protein serine/threonine phosphatases (.1)
Lus10017783 [exp]	124 / 5e-35	ND	/
Lus10035254 [exp]	121 / 1e-34	AT1G48120	41 / 1e-04	hydrolases;protein serine/threonine phosphatases (.1)
Lus10039552 [exp]	117 / 2e-31	ND	60 / 9e-10
Lus10003038 [exp]	116 / 5e-31	ND	61 / 7e-10

Poplar homologues

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No hit found

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF10536 [flax] [poplar]	PMD	Plant mobile domain

Representative CDS sequence

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>Lus10003842 pacid=23166693 polypeptide=Lus10003842 locus=Lus10003842.g ID=Lus10003842.BGIv1.0 annot-version=v1.0

ATGCCGCACCCCACACTCCGAGAAAGGAGGGCGATCATAACCTACAGTAGACTGCTTCTGCTTCTATACCGAGGAGGGAAAGACAGAAAAATTTACACGG

CCTACAACCAGTACGCCGTTGATCCGCTGAGCCAGGCAGCTGCCGCCCCCCATCACAGTACCCCTCTCCTTTTCATTTTTCACACATTCACTAATCACAT

CCTTTGGTTTTACGATACCGACAAGCAAATTCTTGCTCTGCAACCAACTAGCCGGATGGATTACTTGTATGGACCAACACCTCCGTGCGTCGACCCTGAG

GCGATCGATGGAGAACTATTTTGCGGCGAGCGCAACCGACATCGAGCTAGTGAAATTTTCGACAATGAGTGGGTCCCCTACCGTGGCAGTGTAGATTCGA

CACACTTCACTGCGGCACACAGAGTCATTGACGTAGTGGTTTCACCCTGCAGCATCTCTTGGCATCGGCCAGACCGTGTCCTCAGACAGTTTGGGATGTC

CCAGCCCATCCCCACTGTGGACATGTTGGAGGCCGAGGTCATGTTCTTGCTCAGACCGACGCAGCGGAACGAGCATGCGTGGGAGGCAAGGGTTGATCAG

TACGTCGGCCAGTGGGGGAGCAGGTTCGACCACGTGGCCATGAGTGATTACCTCGACCACCCGGGGAGGTAG

AA sequence

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>Lus10003842 pacid=23166693 polypeptide=Lus10003842 locus=Lus10003842.g ID=Lus10003842.BGIv1.0 annot-version=v1.0

MPHPTLRERRAIITYSRLLLLLYRGGKDRKIYTAYNQYAVDPLSQAAAAPHHSTPLLFIFHTFTNHILWFYDTDKQILALQPTSRMDYLYGPTPPCVDPE

AIDGELFCGERNRHRASEIFDNEWVPYRGSVDSTHFTAAHRVIDVVVSPCSISWHRPDRVLRQFGMSQPIPTVDMLEAEVMFLLRPTQRNEHAWEARVDQ

YVGQWGSRFDHVAMSDYLDHPGR

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48120			hydrolases;protein serine/thre...		Lus10003842 [exp]	0	1

Lus10003842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.