Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09320 263 / 8e-92 NDPK1 Nucleoside diphosphate kinase family protein (.1) AT4G11010 189 / 3e-61 NDPK3 nucleoside diphosphate kinase 3 (.1) AT4G23900 187 / 1e-60 Nucleoside diphosphate kinase family protein (.1) AT5G63310 186 / 2e-60 NDPK1A, NDPKIAIA, NDPK2, ATNDPK2 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) AT4G23895 186 / 8e-58 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2), Pleckstrin homology (PH) domain-containing protein (.3) AT1G17410 85 / 4e-21 Nucleoside diphosphate kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024286 [exp] 298 / 8e-106 AT4G09320 272 / 3e-95 Nucleoside diphosphate kinase family protein (.1) Lus10032392 [exp] 190 / 2e-62 AT4G11010 328 / 1e-115 nucleoside diphosphate kinase 3 (.1) Lus10001824 [exp] 187 / 2e-60 AT4G23900 377 / 4e-134 Nucleoside diphosphate kinase family protein (.1) Lus10003878 [exp] 186 / 7e-60 AT4G23900 362 / 6e-128 Nucleoside diphosphate kinase family protein (.1) Lus10014787 [exp] 180 / 6e-58 AT5G63310 301 / 2e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Lus10017931 [exp] 180 / 8e-58 AT5G63310 301 / 3e-104 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Lus10023076 [exp] 89 / 1e-21 AT4G23900 189 / 4e-59 Nucleoside diphosphate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G049900 [exp] 253 / 7e-88 AT4G09320 242 / 2e-83 Nucleoside diphosphate kinase family protein (.1) Potri.002G138800 [exp] 252 / 2e-87 AT4G09320 271 / 5e-95 Nucleoside diphosphate kinase family protein (.1) Potri.012G093800 [exp] 195 / 1e-63 AT5G63310 281 / 1e-96 NDP KINASE 1A, NUCLEOSIDE DIPHOSPHATE KINASE IA, ARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2, nucleoside diphosphate kinase 2 (.1) Potri.001G091001 [exp] 186 / 5e-60 AT4G23900 335 / 2e-117 Nucleoside diphosphate kinase family protein (.1) Potri.003G140600 [exp] 184 / 2e-59 AT4G23900 332 / 2e-116 Nucleoside diphosphate kinase family protein (.1) Potri.003G068100 [exp] 85 / 3e-21 AT1G17410 229 / 1e-77 Nucleoside diphosphate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00334 [flax] [poplar] NDK Nucleoside diphosphate kinase
Representative CDS sequence Show only first row Show all	>Lus10003844 pacid=23166696 polypeptide=Lus10003844 locus=Lus10003844.g ID=Lus10003844.BGIv1.0 annot-version=v1.0 ATGGCAGAACAAACCTTCATTATGATTAAGCCCGATGGAGTCCAGAGGGGACTGGTTGGGGAAATCATCGGCAGATTTGAGAAGAAGGGTTTCTCTCTTA AGGGCAAGTTTTGTTTGAAATTGTTGACAGTGGAACGATCTTTTGCTGAGAGGCATTATGCTGATCTCTCGGCCAAGCCATTCTTCAGTGGACTTGTTGA TTACATAATCTCAGGCCCTGTTGTTGCTATGGTTTGGGAGGGTAAGAATGTCGTCACTACTGGCCGCAAGATAATTGGTGCCACTAACCCTACCGAATCT GCTCCTGGTACCATCCGTGGCGATTTTGCAATTGACATTGGCAGAAACATTATTCATGGAAGTGATGCAGTTGAAAGCGCGAGGAAGGAGATTGCATTGT GGTTCCCTGAAGGTCCTGTGGCCTGGTCAAGCAGCATGCACCCATGGGTGTATGAGAACTAA
AA sequence Show only first row Show all	>Lus10003844 pacid=23166696 polypeptide=Lus10003844 locus=Lus10003844.g ID=Lus10003844.BGIv1.0 annot-version=v1.0 MAEQTFIMIKPDGVQRGLVGEIIGRFEKKGFSLKGKFCLKLLTVERSFAERHYADLSAKPFFSGLVDYIISGPVVAMVWEGKNVVTTGRKIIGATNPTES APGTIRGDFAIDIGRNIIHGSDAVESARKEIALWFPEGPVAWSSSMHPWVYEN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10003844 [exp]	0	1
AT3G06700			Ribosomal L29e protein family ...		Lus10037740 [exp]	1.4	0.9790
AT4G14320			Zinc-binding ribosomal protein...		Lus10038130 [exp]	1.7	0.9742
AT1G74270			Ribosomal protein L35Ae family...		Lus10027754 [exp]	2.0	0.9679
AT3G06700			Ribosomal L29e protein family ...		Lus10016875 [exp]	2.0	0.9770
AT4G24830			arginosuccinate synthase famil...		Lus10012800 [exp]	3.3	0.9553
AT4G09320		NDPK1	Nucleoside diphosphate kinase ...		Lus10024286 [exp]	4.4	0.9495
AT4G14320			Zinc-binding ribosomal protein...		Lus10000176 [exp]	4.5	0.9665
AT1G48830			Ribosomal protein S7e family p...		Lus10023638 [exp]	4.9	0.9637
AT5G59850			Ribosomal protein S8 family pr...		Lus10040309 [exp]	6.6	0.9477
AT2G33370			Ribosomal protein L14p/L23e fa...		Lus10023730 [exp]	6.9	0.9512

Compare expression of checked genes

Lus10003844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.