Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75450 553 / 0 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT2G41510 402 / 2e-136 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 392 / 4e-133 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT5G56970 367 / 3e-123 ATCKX3, CKX3 cytokinin oxidase 3 (.1) AT2G19500 357 / 8e-120 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT4G29740 354 / 1e-119 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT5G21482 336 / 5e-111 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT3G47930 48 / 9e-06 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024289 [exp] 711 / 0 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10027611 [exp] 360 / 2e-121 AT5G56970 407 / 3e-138 cytokinin oxidase 3 (.1) Lus10005317 [exp] 338 / 2e-113 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 340 / 6e-113 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10026471 [exp] 325 / 1e-106 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Lus10031188 [exp] 324 / 1e-106 AT5G56970 484 / 1e-167 cytokinin oxidase 3 (.1) Lus10031765 [exp] 327 / 1e-104 AT1G16560 496 / 2e-171 Per1-like family protein (.1.2.3.4) Lus10016363 [exp] 314 / 3e-104 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10018039 [exp] 295 / 2e-97 AT2G41510 435 / 5e-150 cytokinin oxidase/dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G030500 [exp] 573 / 0 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 565 / 0 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.003G203600 [exp] 410 / 4e-140 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 403 / 3e-137 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.006G047900 [exp] 398 / 3e-135 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G152500 [exp] 392 / 5e-133 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.016G044100 [exp] 386 / 2e-130 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G221000 [exp] 337 / 1e-111 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.007G066100 [exp] 324 / 3e-106 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.016G040300 [exp] 43 / 0.0003 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10003845 pacid=23166694 polypeptide=Lus10003845 locus=Lus10003845.g ID=Lus10003845.BGIv1.0 annot-version=v1.0 ATGGTGGCATGCCACCTTGTGATCATAGTAACACTAGTACTCGGACTAACCCTTGACGACTTCCAGCTCAGCTTAGACTCGGCTGACCTTGCTAGGGTAT CCATGGATTTCGGAAACATGGCTACACGAATGGAGCCTGCTGCAGTGTTCCACCCGACCTCAGACAAGGACGTCGCTCAGTTGGTTAGAGCAGCGTACGA GGGAGGGTTTACGGTCTCAGCAAGAGGGCACGGGCACTCCATCAACGGCCAGGCGATGACCGGGGGAGTGGTGATTGACATGAGTCGGAGGAAGATGTCG TCTTCGCCGCCACCAGATCCGAAGGTGGCAGCGGCGGAGATGCACGTGGACGTGTGGGGTGGAGAACTGTGGATAGAGGTGCTGAGGAGGTGTTTGGAAT ATGGGTTGGCCCCCAGATCTTGGACGGATTACTTGTACCTGTCGGTGGGCGGGACGCTGTCCAATGCCGGGATTAGCGGCCAGGCTTTTAACCACGGCCC TCAGATTAGCAACGTTCACGAGCTCGACGTCGTCACTGGTAAAGGGGAGGTGAAGAGGTGTTCAGAAGAAGAGAACGAAGAGCTGTTCCATGGGGTGCTA GGTGGGCTAGGGCAGTTTGGAATCATCACTAGGGCTCGAATTGCGCTTGAGCCGGCTCCCCAAAGGGTGAGGTGGATCAGGGTATTGTACTCCAACTTTT CAACGTTTACAAAGGACCAAGAGCATCTCATCTCATTAAATGGGAATAATAAGTTCGATTATGTGGAAGGGTTTGTGATTGTGGATGAAGGGTTGATCAA TAATTGGAGATCCTCCTTCTTCTCCCCTAGTAACCCGGTCAAAATCACTTCTCTCGGCACCCATGGAGGGGTCCTTTACTGCTTAGAAGTCACCAAGAAC TACCATGAATCCACCCTTGACACCCTCGATCTGGAAATAGAAACTTTGATGAAGAAATTAAACTTTATACCCTCGTCAGTTTTCACGACGGACCTGGCGT ACATGGAATTCTTGGGCAGAGTTCACAAAGCAGAAGTGAAGCTGAGAGCTAAAGGACTGTGGGAAGTTCCTCACCCTTGGCTTAACCTATTTGTCCCCAA ATCGAGGATCCACGACTTTGACAAGGGAGTGTTCAAGGGCATTTTGGGGAATAACAAGACCAGTGGCCCAATTCTTATTTACCCAATGAACAAGAGCAAG CGTCGTAGTGTTGGGCCGTTATCTTACACGTAA
AA sequence Show only first row Show all	>Lus10003845 pacid=23166694 polypeptide=Lus10003845 locus=Lus10003845.g ID=Lus10003845.BGIv1.0 annot-version=v1.0 MVACHLVIIVTLVLGLTLDDFQLSLDSADLARVSMDFGNMATRMEPAAVFHPTSDKDVAQLVRAAYEGGFTVSARGHGHSINGQAMTGGVVIDMSRRKMS SSPPPDPKVAAAEMHVDVWGGELWIEVLRRCLEYGLAPRSWTDYLYLSVGGTLSNAGISGQAFNHGPQISNVHELDVVTGKGEVKRCSEEENEELFHGVL GGLGQFGIITRARIALEPAPQRVRWIRVLYSNFSTFTKDQEHLISLNGNNKFDYVEGFVIVDEGLINNWRSSFFSPSNPVKITSLGTHGGVLYCLEVTKN YHESTLDTLDLEIETLMKKLNFIPSSVFTTDLAYMEFLGRVHKAEVKLRAKGLWEVPHPWLNLFVPKSRIHDFDKGVFKGILGNNKTSGPILIYPMNKSK RRSVGPLSYT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Lus10003845 [exp]	0	1
AT2G15220			Plant basic secretory protein ...		Lus10026586 [exp]	24.7	0.7431
AT5G52790			CBS domain-containing protein ...		Lus10039288 [exp]	155.8	0.7114
AT4G32360			Pyridine nucleotide-disulphide...		Lus10031463 [exp]	187.4	0.6967

Compare expression of checked genes

Lus10003845 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.