Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18640 130 / 3e-31 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT3G26850 92 / 2e-20 histone-lysine N-methyltransferases (.1.2) AT2G33835 75 / 1e-13 C3HZnF FES1 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002082 [exp] 1027 / 0 AT3G26850 214 / 1e-59 histone-lysine N-methyltransferases (.1.2) Lus10033487 [exp] 467 / 5e-154 AT3G18640 176 / 6e-46 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10020889 [exp] 275 / 2e-80 AT3G18640 167 / 6e-43 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10015319 [exp] 89 / 7e-18 AT2G33835 128 / 7e-31 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10025447 [exp] 85 / 9e-17 AT2G33835 140 / 1e-34 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107800 [exp] 184 / 9e-49 AT3G18640 142 / 8e-35 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G061100 [exp] 162 / 1e-41 AT3G18640 140 / 2e-34 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.011G056600 [exp] 97 / 2e-20 AT2G33835 151 / 2e-38 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.018G051900 [exp] 94 / 1e-19 AT3G26850 168 / 4e-47 histone-lysine N-methyltransferases (.1.2) Potri.006G227200 [exp] 90 / 3e-18 AT3G26850 158 / 2e-43 histone-lysine N-methyltransferases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10003846 pacid=23163345 polypeptide=Lus10003846 locus=Lus10003846.g ID=Lus10003846.BGIv1.0 annot-version=v1.0 ATGAGTGGAGGCAGTCGAAAGCGTAGTTCTAAGTGGGATTTGAAGGAAGAGTCTCGAGCTTCCTATGAGAGTCAGCAAAATTACAGTTCTCGGTCTGGGA AAGCGGATTCAAGTTATCACAAGACTGATGGTGGTGACCGAAGCAGGTGGTCAAATTCAGAACACAGACGAGCCTCACGAGCGGATGGCCTGATTGGTGA TGAATACGGAAGAACCTCGAAGCCAATGGCATGGGAAAGAGATGACAATTATGGACCTAGATTGTCTCCTGGTCTTGATGAAAGGAGGCATAGAAGTCGC CGTCCTTCTCCTGTTAAGGAATGGACACGACCAAGAAGAAGCGGAAGCAATAGTAGGAGCAGGAGCAGGAGTCCAGTTCACTCTATTAGGCGAGATTCAG GGACTTCTGAGAGAAGCAGAAGCAGATCGAGTGTAACAGCTCCTCTATGCAAAGAGTTTGTTGCAGGGAGATGTAGGAGAGGCAGTCAGTGTCAATTTAT CCACCAAAGTGCTCAACTTTATGAGGAAAGCTGGGATGGACGCAAGAAAACTGTATCTTCAAGACATTATGCCTCAAATGATTCAGAGGAGCACCCTTCT GGTAATGGACAAAATGTTGATGGTAGGTATCTGCGTCACAGTTCATCTGATGCATCTGGTAAAGGGTCCAAAGATGACATAGGTAGGGGAAGAGATTTGG ATAGAAGGCAAGTAACAGATAAACCCTGTAAGTTCTTTGCCTCTGCGAACTGCAGGAACGGAAACCGTTGTAGGTATTCTCATCAAGTTGAAGCTGAAGT GAGCCCTGAAAGGATGCCACGTGATGATGAAAAGCGGTTGGTTGACCAAGATATGGACGATCGGGAGAAAACGTGGGATGGCCCTTTGTGGAGCGATGTG GATAATTATTCGACTGCTGCCAAGTCAGGCAGAGATGGGGAGAATCCATTGAATGATGGGGAATATAATAAGCCTAATGATCTTTCAGATGCTGGACCAA CTGTCGAGCCATGGTCTGTGGATAGTTCACGTGTTCAACGTTTGGATGGCAGAGCAGCTCTGGATCATCAGGCACCAGCTAATTTGGTTGAGAGTGACAG AAGTGAGACCTTGAAGGTGAAAGAGGACCAAAGTATTCAAAATGATTGGGAAGGTGACATGGAAATGTCTCCTGAATGGAATCATGGACCAGCTAACAAT TTAGACAGTATCGCCATGGAAGTCCCGGTGCTAGGCGATGATGCAACAGTGGCTGTCCAGCAATCGACACATGAAAGGCCTGCCATTCACTCTGTATACT ATTCCAGGAAGCTCGGTGCTAGAGAAGCCAAGGGTTTGGGGATAAACAGATCCGGCACTGCCTCAAATGCAAACCGGGATGGTGCGAGCCCGAATGCTTT GCCTATTCTTTCCAGCACAAACTCAGTTGAGCAAACTCAAATGGGAACTCTTCCGGATCATTCCAGAGGAGAATTGGCGATAAACCCTCTGAATGTCGAT TCTGGTATTCCCTCGAGTCAGAATGTGGTCAGTGATGAACAACTCTCTAAGCTTACCGACCTTTCAGCTTCTCTTGCTCAGTTACTTGGTCAAGGCCAGC AGCTTCCTCAACTTTATGCTTCTCATAGCTCTGATCATTCTAATTGCGATGGAGAGAAAGACAGTGCAGATGGAGGGGTGCAAGTGGCTGCATCAAACAG GAGTCATGAGAAGGTCCTTCAGGGCACCGAAGAAGTGCCCGAGTCGGATAATCCCAAACCCATTGCAGAATCTGGCAGCAAAGCAAAGGAGAGTAAAGCC AGAGAAGAAAAAACCGATGATGAAAAAGGCAAGGGGCTCCGAGCGTTCAAGTTTGCACTTGTGGAGTTTGTGAAGGAAGCTTTGAAACCGGCTTGGAAAG AAGGGCAAGTGAGCAGAGACTCATACAAGAACATAGTGAAGAAGGTGGTGGACAAAGTCACTAGCACAATGCAGGCGAGTAGCATACCCCAGACGCAAGA AAAGATCGACCAATATCTGTCGTCCTCAAAGCCAAAGCTTACAAAACTTGTACAGGGAGTGTTCTTTTGTGCTTTGTTGCAGGCTTATGTGGAGAAGTTC CAGAAGGGTAAATGA
AA sequence Show only first row Show all	>Lus10003846 pacid=23163345 polypeptide=Lus10003846 locus=Lus10003846.g ID=Lus10003846.BGIv1.0 annot-version=v1.0 MSGGSRKRSSKWDLKEESRASYESQQNYSSRSGKADSSYHKTDGGDRSRWSNSEHRRASRADGLIGDEYGRTSKPMAWERDDNYGPRLSPGLDERRHRSR RPSPVKEWTRPRRSGSNSRSRSRSPVHSIRRDSGTSERSRSRSSVTAPLCKEFVAGRCRRGSQCQFIHQSAQLYEESWDGRKKTVSSRHYASNDSEEHPS GNGQNVDGRYLRHSSSDASGKGSKDDIGRGRDLDRRQVTDKPCKFFASANCRNGNRCRYSHQVEAEVSPERMPRDDEKRLVDQDMDDREKTWDGPLWSDV DNYSTAAKSGRDGENPLNDGEYNKPNDLSDAGPTVEPWSVDSSRVQRLDGRAALDHQAPANLVESDRSETLKVKEDQSIQNDWEGDMEMSPEWNHGPANN LDSIAMEVPVLGDDATVAVQQSTHERPAIHSVYYSRKLGAREAKGLGINRSGTASNANRDGASPNALPILSSTNSVEQTQMGTLPDHSRGELAINPLNVD SGIPSSQNVVSDEQLSKLTDLSASLAQLLGQGQQLPQLYASHSSDHSNCDGEKDSADGGVQVAASNRSHEKVLQGTEEVPESDNPKPIAESGSKAKESKA REEKTDDEKGKGLRAFKFALVEFVKEALKPAWKEGQVSRDSYKNIVKKVVDKVTSTMQASSIPQTQEKIDQYLSSSKPKLTKLVQGVFFCALLQAYVEKF QKGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003846 [exp]	0	1
AT3G26850			histone-lysine N-methyltransfe...		Lus10002082 [exp]	2.0	0.9190
AT3G51500			unknown protein		Lus10017918 [exp]	2.2	0.8968
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	9.3	0.9012
AT3G14830			unknown protein		Lus10041938 [exp]	12.6	0.9013
AT1G60490		PI3K, ATVPS34	PHOSPATIDYLINOSITOL 3-KINASE, ...		Lus10030885 [exp]	14.5	0.8943
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10026448 [exp]	16.7	0.8475
AT5G43920			transducin family protein / WD...		Lus10022847 [exp]	19.3	0.8703
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10036788 [exp]	22.1	0.8894
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10036123 [exp]	23.0	0.8793
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10014295 [exp]	23.7	0.8401

Compare expression of checked genes

Lus10003846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.