Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61110 196 / 3e-60 NAC ANAC025 NAC domain containing protein 25 (.1) AT3G04070 194 / 2e-59 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G69490 189 / 3e-58 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1) AT3G15510 187 / 2e-56 NAC ATNAC2, ANAC056, NARS1 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) AT1G01720 182 / 2e-55 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15500 182 / 5e-55 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT1G52890 181 / 1e-54 NAC ANAC019 NAC domain containing protein 19 (.1) AT1G77450 179 / 2e-54 NAC ANAC032 NAC domain containing protein 32 (.1) AT4G27410 177 / 3e-53 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT5G08790 174 / 3e-52 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002083 [exp] 526 / 0 AT5G08790 225 / 7e-69 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10003269 [exp] 202 / 4e-62 AT3G04070 324 / 3e-109 NAC domain containing protein 47 (.1.2) Lus10043095 [exp] 201 / 2e-61 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10032657 [exp] 201 / 2e-61 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10027357 [exp] 201 / 1e-60 AT3G04070 172 / 3e-50 NAC domain containing protein 47 (.1.2) Lus10042531 [exp] 198 / 2e-60 AT3G04070 303 / 4e-101 NAC domain containing protein 47 (.1.2) Lus10006547 [exp] 197 / 3e-60 AT3G04070 337 / 4e-114 NAC domain containing protein 47 (.1.2) Lus10011215 [exp] 196 / 6e-60 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10018469 [exp] 194 / 3e-59 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G256600 [exp] 214 / 2e-65 AT3G04070 190 / 7e-56 NAC domain containing protein 47 (.1.2) Potri.009G052200 [exp] 212 / 2e-64 AT4G27410 188 / 1e-55 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.011G123500 [exp] 201 / 9e-62 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.013G054000 [exp] 201 / 1e-61 AT3G04070 338 / 9e-115 NAC domain containing protein 47 (.1.2) Potri.019G031400 [exp] 200 / 2e-61 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.011G046700 [exp] 199 / 2e-61 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.004G038000 [exp] 198 / 7e-61 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.001G404400 [exp] 197 / 3e-60 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.009G052300 [exp] 197 / 7e-60 AT1G01720 179 / 2e-53 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.018G095000 [exp] 191 / 4e-57 AT1G01720 187 / 3e-56 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10003847 pacid=23163331 polypeptide=Lus10003847 locus=Lus10003847.g ID=Lus10003847.BGIv1.0 annot-version=v1.0 ATGGAGCTTGATGATCAGGAGACTTTCGTGATCAAGAATGAAGGCGGGACCGATGATTATGCTGACGTTGAGGATCATCATCATGAAGTTGTTGATTTGG TACCGCCGGGTTTCAGGTTTTGCCCTAGGGATGACGAGCTGGTTGTTCATTACCTGAAGAAGAAGGTGTTGGGCGAGCCTTTGCCGATGAACAAGATCTT GGAGGCCAACCTGTACAAGTTCGATCCTGACACGGTTTCCGCAACGTACGAAGGAACTGGTGAAGGAGAGTGGTACTTCTTCACACCAAGGGACAGGAAG TATCCGAACGGAGACCGGCCGAACAGGGCAGCAGGAAACGGCTACTGGAAGGCCACTGGCGCCGACAAGAAAATGGTCGTTAAAAACGTGGCTGTGGGGC TGCGGAAGGCGCTTGTTTACTACTACGGGAAGCCTCCGAAGGGCGTGAAGTCTAACTGGATCATGCATGAGTATAAGCTCGCAGATTCCAGTGTTCAAAG TACTCGTACTCAAAGGACCGATAAATCAGACATGCGGCTGGATGATTATATCCTATGCAGAATATACAGGAAGTCCGAGAGGGCGAGAAACTTTCGTTAC ACCGGCTACGACGAGGAAGCTCGTGATCTTCTTCGTCAAGAAGACTCCCCCACCGCGGCTGCCACCTCTCCCTCCACTTCTTCTCTGATCATCAACCCAA CTGACCAAACACCGTCGTTTCATCACCATCCTCCTCCTCCTCCTCCTCAACAGCAACTGCCTACAGCTCTACCATGGCAATATAACAACGCTCTTGGTGT CCCAAGCAACAATCCCCTTGAGCAGCAGTCGATCACCTACATGAATAACTATGTAAACGATCATTATGAAGACCTTGGTAGAGACTGGAGCGCCCTTGAT TTGGACAGCCTTGCTCGTTGTTTCAATGGAGACAATGAGTACGTTCCACCACTTCCTGTTGATGATGGCATGGATTATGGGATAATTGACCCTAATTCGT TTAACTTATGA
AA sequence Show only first row Show all	>Lus10003847 pacid=23163331 polypeptide=Lus10003847 locus=Lus10003847.g ID=Lus10003847.BGIv1.0 annot-version=v1.0 MELDDQETFVIKNEGGTDDYADVEDHHHEVVDLVPPGFRFCPRDDELVVHYLKKKVLGEPLPMNKILEANLYKFDPDTVSATYEGTGEGEWYFFTPRDRK YPNGDRPNRAAGNGYWKATGADKKMVVKNVAVGLRKALVYYYGKPPKGVKSNWIMHEYKLADSSVQSTRTQRTDKSDMRLDDYILCRIYRKSERARNFRY TGYDEEARDLLRQEDSPTAAATSPSTSSLIINPTDQTPSFHHHPPPPPPQQQLPTALPWQYNNALGVPSNNPLEQQSITYMNNYVNDHYEDLGRDWSALD LDSLARCFNGDNEYVPPLPVDDGMDYGIIDPNSFNL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10003847 [exp]	0	1
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Lus10010119 [exp]	4.4	0.8056
AT5G39130			RmlC-like cupins superfamily p...		Lus10015129 [exp]	6.2	0.8056
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017177 [exp]	7.5	0.8056
					Lus10017294 [exp]	8.7	0.8056
AT4G04960			Concanavalin A-like lectin pro...		Lus10039837 [exp]	9.7	0.8056
					Lus10006424 [exp]	9.8	0.5628
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10039560 [exp]	10.7	0.8056
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Lus10027892 [exp]	11.5	0.8056
					Lus10003941 [exp]	12.3	0.8056
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	13.1	0.8056

Compare expression of checked genes

Lus10003847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.